PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00004919-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

WOX

Protein Properties

Length: 285aa MW: 31531.3 Da PI: 5.9165

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00004919-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.4e-20	27	88	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t++q+++L++l+++ r psae++++++++l +++ ++V++WFqN++a+e++ WALNUT_00004919-RA 27 STRWTPTTDQIRILKDLYYNngVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 88 58***************8678***********************************97 PP
2	Wus_type_Homeobox	114.4	5.7e-37	26	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ WALNUT_00004919-RA 26 SSTRWTPTTDQIRILKDLYYnNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 90 689*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-11	14	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.349	23	89	IPR001356	Homeobox domain
SMART	SM00389	5.1E-6	25	93	IPR001356	Homeobox domain
CDD	cd00086	3.18E-7	28	90	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-7	28	88	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-17	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEPQQQNQPP NEDGGSGKGG FLCRPSSTRW TPTTDQIRIL KDLYYNNGVR SPSAEQIQRI 60 SARLRQYGKI EGKNVFYWFQ NHKARERQKK RFNTDVPMQR GAGNGGWKPE ESIHNKYPMA 120 NITSGFPASS SSSGVISVGQ MGNYGYGSVT MEKSFRDCSI SAGGGGGVGG SISHNFGWVG 180 VNDPYSSSYT FLDKRMSMEE NSGEGDHHDQ EEEEEEEEAA PEIETLPLFP MHGDDINGFC 240 NISTPSSNGF YTTWYRSGGD DGKSSSRTSL ELSLNSYSRR SSPQH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447418	2e-78	AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018833034.1	0.0	PREDICTED: protein WUSCHEL-like
Swissprot	Q8LL11	3e-93	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A2I4FMY9	0.0	A0A2I4FMY9_JUGRE; protein WUSCHEL-like
STRING	EOX90865	1e-119	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	2e-45	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]