PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00004984-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 265aa    MW: 29238.9 Da    PI: 5.467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00004984-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.2e-1561111255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ykGVr++   + Wv+e   +++++  + r++lg++  +e+Aa+a++aa+++++g
  WALNUT_00004984-RA  61 LYKGVRQRN-GKNWVSE---VCTGQkSKSRIWLGTYAAPEMAARAYDAAALAIRG 111
                         69****988.788****...77755455************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1160111IPR001471AP2/ERF domain
CDDcd000182.20E-1160121No hitNo description
PROSITE profilePS5103218.66361119IPR001471AP2/ERF domain
SMARTSM003806.7E-2161125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2561121IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1861121IPR016177DNA-binding domain
PRINTSPR003674.5E-96273IPR001471AP2/ERF domain
PRINTSPR003674.5E-9101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDSENIQPLS SSSSSNSSCQ LSPCSARQNL NPPLISQAPC ISSQKRIKFG RKKFKVTRYP  60
LYKGVRQRNG KNWVSEVCTG QKSKSRIWLG TYAAPEMAAR AYDAAALAIR GTMAVLNFPD  120
SAWLVPRARS SSPRDIQEAA FMAAEAFRPG AVSSSSCSSN TTDLLPNKTK DKVLETSKRE  180
NKDQKVLEPL SLEIISANKS SSDDDEEVPN QYSTFFFDEE ALFNMPGLLD SMAEGLILTP  240
PAIGRGFDWD DHDFACDMDL TLWSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-11621191572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833141.10.0PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A2I4FNB00.0A0A2I4FNB0_JUGRE; dehydration-responsive element-binding protein 1F-like
STRINGXP_002532187.17e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-33C-repeat-binding factor 4