PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00005035-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TALE

Protein Properties

Length: 815aa MW: 88510.4 Da PI: 7.4229

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00005035-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	574	611	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + WALNUT_00005035-RA 574 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 611 664459******************************88 PP
2	BELL	93.8	1.6e-30	451	505	18	72
BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ WALNUT_00005035-RA 451 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 505 7***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.2E-68	371	503	IPR006563	POX domain
Pfam	PF07526	4.7E-41	376	502	IPR006563	POX domain
PROSITE profile	PS50071	12.568	552	615	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	555	619	IPR001356	Homeobox domain
CDD	cd00086	3.43E-13	555	616	No hit	No description
SuperFamily	SSF46689	2.27E-17	557	623	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	558	621	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	572	611	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MGLATPPLPP IFSFPKTDHS ISIPEKSNNS ANSMSQDYHH GIFSFSNGFE RSTVSHQEQQ 60 QQHQQHHHHH HHLHEAQQHQ MAQQIRRDKL RVQGFEHPPP VPLVGIDEEE SGGLPVYETA 120 GMLSEMFNFP PGGATATDLL EQPMAPSYRS PRPQPAPATS MANEWYGSRQ GMVVGLGPLG 180 DAKNQNSVNS RDSLAQPHHH HHHAQISSID ATDSAAAMQL FLMNPQPRSP SPPPPSTSST 240 LHMLLPNPST SIQGFAASGA AGGGFGQFTW VPDGSHVGGT AGTQLNNPSE IGGVVESQGL 300 SLSLSSSLQH LEAAKAEELR MGDGGILYYN QGAGGSSSTQ YYKNLGGHNQ TLHLPGMAQN 360 HQVHVGFGSS LGVVNVLRNS KYVKAAQELL EEFCSVGRGQ FKKKKFGKHN STNPNPNPGN 420 NNTTGAGSSS TSKDHLPPLS AADRIEHQRR KVDRRYNHYC EQMQMVVNSF DLVMGFGAAV 480 PYTALAQKAM SRHFRCLKDA ISAQLKHSCE LLGDKDGAGS SGITKGETPR LKLLEQSLRQ 540 QRAFHQMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ 600 VSNWFINARV RLWKPMVEEM YQQEAKDVVG TEEREGERSQ NNSGLTQTPT PTTTAATPAS 660 TTGPATTATT IPTTTITTIT PTGKRSDVNA PESDPSLIAI NRHCFSENQA KQGNSTTTTT 720 ATEMAPPVSQ CFPTTQDSSD ILHQHRSMAT DDTCRRGSIV SADHHFGTIS GNADIGSTLI 780 RFGTTAGDVS LTLGLRHAGN MPEKSSFSVR DFGGC

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MGLATPPLPP IFSFPKTDHS ISIPEKSNNS ANSMSQDYHH GIFSFSNGFE RSTVSHQEQQ  60
QQHQQHHHHH HHLHEAQQHQ MAQQIRRDKL RVQGFEHPPP VPLVGIDEEE SGGLPVYETA  120
GMLSEMFNFP PGGATATDLL EQPMAPSYRS PRPQPAPATS MANEWYGSRQ GMVVGLGPLG  180
DAKNQNSVNS RDSLAQPHHH HHHAQISSID ATDSAAAMQL FLMNPQPRSP SPPPPSTSST  240
LHMLLPNPST SIQGFAASGA AGGGFGQFTW VPDGSHVGGT AGTQLNNPSE IGGVVESQGL  300
SLSLSSSLQH LEAAKAEELR MGDGGILYYN QGAGGSSSTQ YYKNLGGHNQ TLHLPGMAQN  360
HQVHVGFGSS LGVVNVLRNS KYVKAAQELL EEFCSVGRGQ FKKKKFGKHN STNPNPNPGN  420
NNTTGAGSSS TSKDHLPPLS AADRIEHQRR KVDRRYNHYC EQMQMVVNSF DLVMGFGAAV  480
PYTALAQKAM SRHFRCLKDA ISAQLKHSCE LLGDKDGAGS SGITKGETPR LKLLEQSLRQ  540
QRAFHQMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ  600
VSNWFINARV RLWKPMVEEM YQQEAKDVVG TEEREGERSQ NNSGLTQTPT PTTTAATPAS  660
TTGPATTATT IPTTTITTIT PTGKRSDVNA PESDPSLIAI NRHCFSENQA KQGNSTTTTT  720
ATEMAPPVSQ CFPTTQDSSD ILHQHRSMAT DDTCRRGSIV SADHHFGTIS GNADIGSTLI  780
RFGTTAGDVS LTLGLRHAGN MPEKSSFSVR DFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	561	619	5	63	Homeobox protein Meis2
3k2a_B	2e-16	561	619	5	63	Homeobox protein Meis2
4xrs_A	2e-16	561	618	1	58	Homeobox protein Meis1
4xrs_B	2e-16	561	618	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826438.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-159	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2I4F462	0.0	A0A2I4F462_JUGRE; BEL1-like homeodomain protein 4
STRING	VIT_04s0023g01020.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-134	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]