PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00005071-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 516aa MW: 54214.9 Da PI: 8.7282

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00005071-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H WALNUT_00005071-RA 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	11.2	0.0012	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + WALNUT_00005071-RA 138 WKCDKCSKKYAVQSDWKAHSKIC 160 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	61	84	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.83E-7	61	84	No hit	No description
PROSITE profile	PS50157	10.949	62	84	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-5	62	84	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	62	84	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	64	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	103	133	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.7E-4	126	159	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.83E-7	133	158	No hit	No description
SMART	SM00355	150	138	158	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MQVDLDNSSI VSGEASVSSS GNQSTQPPKP SAKKKRNLPG MPDPDAEVIA LSPKTLLATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEPSC VHHNPSRALG 120 DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA EESARAQTQT PALVNSNSEP DPNTQPVDSC PPAPAPSPSP PPPPSPSPPA 240 PPRTTGLISP VLSNKSPELP EKPPHIVEAP VTTGLNGNCS STTSSSSNGN TSCSVFASLF 300 ASSTASASLQ NPQPPVFTDL IRAMARPDPP TDITRPSSTE TISLCLATNH GSSLFGTAGQ 360 ELRQYAPPPQ PAMSATALLQ KAAQMGASAT NASLLRGFGI VSSSSSSGQQ DGLHWSQRQV 420 ETESSSVPAG LGLGHCDGSS GLKELMMGTP SMFGPKQTTL DFLGLGMAAG GGSPSSGLSA 480 LITSIGDGLD VATATAAAAS YGGAEFSAKD VGRRSS

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MQVDLDNSSI VSGEASVSSS GNQSTQPPKP SAKKKRNLPG MPDPDAEVIA LSPKTLLATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEPSC VHHNPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA EESARAQTQT PALVNSNSEP DPNTQPVDSC PPAPAPSPSP PPPPSPSPPA  240
PPRTTGLISP VLSNKSPELP EKPPHIVEAP VTTGLNGNCS STTSSSSNGN TSCSVFASLF  300
ASSTASASLQ NPQPPVFTDL IRAMARPDPP TDITRPSSTE TISLCLATNH GSSLFGTAGQ  360
ELRQYAPPPQ PAMSATALLQ KAAQMGASAT NASLLRGFGI VSSSSSSGQQ DGLHWSQRQV  420
ETESSSVPAG LGLGHCDGSS GLKELMMGTP SMFGPKQTTL DFLGLGMAAG GGSPSSGLSA  480
LITSIGDGLD VATATAAAAS YGGAEFSAKD VGRRSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-36	134	207	3	72	Zinc finger protein JACKDAW
5b3h_F	9e-36	134	207	3	72	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826421.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9SCQ6	1e-180	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2I4F439	0.0	A0A2I4F439_JUGRE; protein indeterminate-domain 2-like
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]