PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005131-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 831aa    MW: 91992.7 Da    PI: 9.1326
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005131-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.83.2e-19739819186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+ + v++Li++r e+++r++  k +++lWee+s ++   g++rs+ +Ck+ w +l ++y+++k g+k+r     +++pyf++++
  WALNUT_00005131-RA 739 KWKPEDVKKLIKMRGELHSRFQVVKGRMALWEEISGNLLGDGITRSAGECKSLWTSLVQKYEETKSGKKSR-----KSWPYFEEMD 819
                         7********************************************************************96.....56*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.102.1E-6697347IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.18E-5498427IPR001279Metallo-beta-lactamase
SMARTSM008491.0E-23110307IPR001279Metallo-beta-lactamase
PfamPF127061.4E-10121257IPR001279Metallo-beta-lactamase
PROSITE profilePS500907.526732796IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4733798IPR009057Homeodomain-like
PfamPF138374.6E-17737820No hitNo description
CDDcd122035.80E-20738803No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MQSVFPEGSP LSRRLSLSPR MAAFGALSLC PCSLLWRPNP TNKRSVLCSL GSQTSTGTAR  60
SKVPRKRSGI KEGARTSMED SVQRKMEEFY EGSDGPPLRV LPIGGLGEIG MNCMLVGNYD  120
RYILIDAGVM FPDYDELGVQ KITPDTSFIK RWSHKIEAVV ITHGHEDHIG ALPWVIPALD  180
SRTPIFASSF TMELIKKRLK ENGIFVSSRL KVFRTRRKFM AGPFEIEPIR VTHSIPDCCG  240
LVLRCADGTI LHTGDWKIDE TPLDGKVFDR EALEELSKEG VTLMMSDSTN ILSPGRTMSE  300
SVVADALLRR ISAAKGRVIT TQFASNIHRL GSVKAAADLT GRKLVFVGMS LRTYLDAAWK  360
DGKAPIDPST LAEPRAALNL ASYGGSHSLK LSKEDIILYS AKVIPGNESR VMKMLNRISE  420
IGTPIVIKNG EMLGVSHLRN RRVLSSGFTS LGKESLQLMY SDGDKAFGTS TELCIDERQR  480
IALDGIIVIS MEILRGQDAD GLIENSLKGK IRITTRCLWL DKGKLLDALH KAAHAALSSC  540
PVNCPLAHME RTVAEVLRKM VRKYSGKRPE VIAIAVENPE AVLSDELNAR LSGKSHVDFG  600
MPALRKVVDG RLKEIDGHPK EKQSDRMHAE EDVASIHLEN TSQQGEYTEL ERLLPEEDTT  660
TSSSSLTEQL LPDSNDSDDF WKVFTSSSPV DKGAKANNGF VPHTKHVSQI EKVGTESVKD  720
DSLKLSNAQP KSKPVKRNKW KPEDVKKLIK MRGELHSRFQ VVKGRMALWE EISGNLLGDG  780
ITRSAGECKS LWTSLVQKYE ETKSGKKSRK SWPYFEEMDR VFSDTDAMAT K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bk1_A5e-609857817562Metal dependent hydrolase
3bk2_A5e-609857817562Metal dependent hydrolase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825123.10.0PREDICTED: uncharacterized protein LOC108994388 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A2I4F0F00.0A0A2I4F0F0_JUGRE; uncharacterized protein LOC108994388 isoform X1
STRINGEOY224510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]