PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005217-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 204aa    MW: 22845 Da    PI: 8.8372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005217-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++l ++++ +G ++W+  a+t g++R++k+c++rw++yl
  WALNUT_00005217-RA 16 KGTWTAEEDQKLSQYIEIHGAKRWEIAAATAGLNRCGKSCRLRWLNYL 63
                        799*******************************************97 PP
2Myb_DNA-binding491.4e-1569114148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ +  E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  WALNUT_00005217-RA  69 RGNISDAEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 114
                         788999****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0141163IPR017930Myb domain
SuperFamilySSF466892.85E-2815110IPR009057Homeodomain-like
SMARTSM007173.2E-121565IPR001005SANT/Myb domain
PfamPF002492.3E-141663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221770IPR009057Homeodomain-like
CDDcd001675.42E-101863No hitNo description
PROSITE profilePS5129425.7864118IPR017930Myb domain
SMARTSM007173.9E-1568116IPR001005SANT/Myb domain
PfamPF002496.3E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2471118IPR009057Homeodomain-like
CDDcd001672.36E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAPKNVGSSA KKVMNKGTWT AEEDQKLSQY IEIHGAKRWE IAAATAGLNR CGKSCRLRWL  60
NYLRPNIKRG NISDAEEDLI LRLHKLLGNR WSLIAGRLPG RTDNEIKNYW NSHLNKKINR  120
AMIEKTLEVP TAAVLLRDRT EITMPQKSGA SINDQVGIEA AGGHVKENGN TELAANSEFT  180
ELGSCTGLEW ANKFLELDDD AWLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-291411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825037.11e-149PREDICTED: transcription factor MYB114-like
TrEMBLA0A2I4F0611e-148A0A2I4F061_JUGRE; transcription factor MYB114-like
STRINGEOY242844e-78(Theobroma cacao)
STRINGXP_008356551.11e-78(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-53myb domain protein 5