PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005536-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 169aa    MW: 18847.5 Da    PI: 9.9599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005536-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-203079255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrd +     r +r +lg+f+taeeAa a+++a+ +l+g
  WALNUT_00005536-RA 30 HFRGVRKRP-WGRFAAEIRDpW-----RkTRKWLGTFDTAEEAALAYDEAAISLRG 79
                        69*******.**********88.....45************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-293086IPR001471AP2/ERF domain
PROSITE profilePS5103221.8123087IPR001471AP2/ERF domain
PfamPF008472.3E-133079IPR001471AP2/ERF domain
SMARTSM003804.0E-313093IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-213087IPR016177DNA-binding domain
CDDcd000182.62E-293086No hitNo description
PRINTSPR003674.9E-103142IPR001471AP2/ERF domain
PRINTSPR003674.9E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSIDALHTPR DSLAVSGTQS QSTGKRREVH FRGVRKRPWG RFAAEIRDPW RKTRKWLGTF  60
DTAEEAALAY DEAAISLRGI KARTNFGLRG LVITPPVLSG GAGACNYFGW MPKPECFSGA  120
GSPPPVRSEY KGYNMENVDV MVVSEQDKEK KNETKQPFLF DLNLPAPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-213089565ATERF1
3gcc_A7e-213089565ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827167.11e-124PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLA0A2I4F6A31e-123A0A2I4F6A3_JUGRE; ethylene-responsive transcription factor 3-like
STRINGXP_008235314.19e-59(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-24ERF domain protein 12