PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00005561-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 204aa MW: 22890 Da PI: 8.6042

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00005561-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H WALNUT_00005561-RA 40 YSCSFCNRKFRSAQALGGHMNVH 62 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.76E-6	37	67	No hit	No description
SMART	SM00355	0.0021	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.531	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MERTYLSSGT VKEKSCESNK FGFEEDHSCG TSWSAKHECY SCSFCNRKFR SAQALGGHMN 60 VHRIERARLR LLASSVSESH NPNPKFKPYP TLDSSPSSSS EKFPPHRHHP LPSLSSPLSA 120 PTDEEKKLVI IPELDPPLSL RGKDIRNKKR IRGVLGFGEL TGFAQIDEPK DVLREKGTVS 180 LDLEIGLVKD RKQDVDLELR LGCF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018827155.1	1e-148	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A2I4F683	1e-147	A0A2I4F683_JUGRE; transcriptional regulator SUPERMAN-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2843	31	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	1e-22	C2H2 family protein