PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005609-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 823aa    MW: 89966.6 Da    PI: 5.9924
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005609-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.92.4e-1254598162374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs +++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+alp s++    s++ ++a+++f+ +sP++k
  WALNUT_00005609-RA 459 LTLLLQCAEAVSVDNFEEANKTLLEISELSTPFGTAAQRVAAYFSEAMSARLVSSCLGIYAALPHSHSY---SQKLASAFQVFNGISPLVK 546
                         579************************************************************999998...99999************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+egeervHiiD+di+qGlQWp L++ La+Rp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + va
  WALNUT_00005609-RA 547 FSHFTANQAIQEAFEGEERVHIIDLDIMQGLQWPGLFHILACRPGGPPYVRLTGLGT----SMDALEATGKRLSDFAEKLGIPFEFFP-VA 632
                         *********************************************************....***************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.ea 273
                         +++ +l++e+L+ +++EalaV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yy+alfdsl ++
  WALNUT_00005609-RA 633 EKVGNLDPERLNGSKREALAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYTALFDSLgAS 716
                         ************************9..999999999999....**********************.899*******************999 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l+ +aa+qa lll +++sdgy++ e++g+l lgWkd
  WALNUT_00005609-RA 717 SYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHNWREKLQQCGFKGISLGGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKD 806
                         9******************************888776.***************************************************** PP

                GRAS 365 rpLvsvSaWr 374
                           L+++SaWr
  WALNUT_00005609-RA 807 LCLLTASAWR 816
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.474432796IPR005202Transcription factor GRAS
PfamPF035148.5E-123459816IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MAACTLLDAG INGNNSDDTT DRSNIIFNGR SPLTSTASNK SINNIMFTGI CEEQPQNRGL  60
QHCQSNGKMM RKRMASEIDM EIQSTLITAS TAGKNDYTRL SSRSSVATIS NSTASSMSGG  120
GSSFPPVTAS DNYIISPGEN FSKPNPKQTN NYSTSLPSSM NLTTMTSSGE GLSCGFLSCV  180
TPVTLSHDHD YNEETLSLHH QHQHHDYGHD HQTSAHHLNQ TPAVCGFSGL PLFSPESRSV  240
PNPSGTAFTA SSASMEDSSA TAWIDGVIKD LIHSSNNVSI PQLIQNVREI IYPCNPNLAA  300
LLEYRLRFLT STDPIPNCPE RRRAVAQQQQ QGLVQGSSER IKLNLLDSGN FSSPESMNQL  360
YLHWGVAPLP SASPDPAVDD HNHQQQQQAC GSSILSLNQV HQVQEKRRQE EQENSSPAEI  420
AAPATSTACI TTSAAILSRE KKLEEMRQQK RDEEGLHLLT LLLQCAEAVS VDNFEEANKT  480
LLEISELSTP FGTAAQRVAA YFSEAMSARL VSSCLGIYAA LPHSHSYSQK LASAFQVFNG  540
ISPLVKFSHF TANQAIQEAF EGEERVHIID LDIMQGLQWP GLFHILACRP GGPPYVRLTG  600
LGTSMDALEA TGKRLSDFAE KLGIPFEFFP VAEKVGNLDP ERLNGSKREA LAVHWLQHSL  660
YDVTGSDTNT LWLLQRLAPK VVTVVEQDLS HAGSFLGRFV EAIHYYTALF DSLGASSYGE  720
ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFHNWREK LQQCGFKGIS LGGNAATQAT  780
LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWRPPFS RYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.04448174379Protein SCARECROW
5b3h_D0.04448174379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827109.10.0PREDICTED: protein SCARECROW-like isoform X1
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2I4F6370.0A0A2I4F637_JUGRE; protein SCARECROW-like isoform X1
STRINGVIT_08s0056g00050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein