PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00005734-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 234aa MW: 25372.8 Da PI: 8.9689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00005734-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.6	7.9e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vh++FGasnv+k+l ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+ WALNUT_00005734-RA 42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHRVFGASNVSKMLMEVPESQRADTANSLVYEANLRLRDPVYGCMGAISALQQQIQTLQ 132 7**************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e WALNUT_00005734-RA 133 AELNAVRAE 141 **99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.662	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.4E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSTERERFYD IGKKIKRETD ASSQMGRRHL FGPSGTLNTL TPCAACKLLR RRCAEECPFS 60 PYFSPHEPQK FAAVHRVFGA SNVSKMLMEV PESQRADTAN SLVYEANLRL RDPVYGCMGA 120 ISALQQQIQT LQAELNAVRA EMLQHKFSNF IPSSPAALVS SGAAPVSISH APPHTTLSRP 180 PSPPPPPPNP PVLPPLPSAV TSFSSSSSTS LYTPPSSATG YSSIILNANI QYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	42	145	11	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	42	145	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018828456.1	1e-171	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-74	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2I4F9X3	1e-169	A0A2I4F9X3_JUGRE; LOB domain-containing protein 15-like
STRING	cassava4.1_031813m	1e-101	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-77	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]