PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00005753-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

bZIP

Protein Properties

Length: 393aa MW: 42492.1 Da PI: 6.5815

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00005753-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.4	4e-10	196	252	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + l s WALNUT_00005753-RA 196 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 252 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-16	192	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	194	257	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-11	196	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-10	196	251	No hit	No description
Pfam	PF00170	9.9E-9	196	253	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.25E-22	197	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MAMAIEKFSM SMSTQMQDQP SNPTTNPISN STFIPNPMTP HNNAAPPHPQ TTSSMFENMR 60 SGTHHRRAHS DVSFRLPEDM ADLSPSDPFN GVGVGVGGGG GGSSAASLEE MGSEDDLFST 120 YIDVEKLGTD QSGGEGNAGG GGGGERGVNR ARHRHSSSVD GSSTTTSSTS VFGEIMDAKK 180 AMPPDKLAEL WTLDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQTLQ TEATTLSAQL 240 TLFQRDTTGL SSENTELKLR LQAMEQQAQL RDTLNDALKK EVDRLRIATG EIMSPSESFN 300 LGMHQMAYTL SQFFPLPQHP GPAGHQNMQL PFNHSQSSMS AQQLHQSNSH PLSEMRQNDP 360 LGRMQGLDIS GKGSSLVKSE GPSLSASESS STF

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MAMAIEKFSM SMSTQMQDQP SNPTTNPISN STFIPNPMTP HNNAAPPHPQ TTSSMFENMR  60
SGTHHRRAHS DVSFRLPEDM ADLSPSDPFN GVGVGVGGGG GGSSAASLEE MGSEDDLFST  120
YIDVEKLGTD QSGGEGNAGG GGGGERGVNR ARHRHSSSVD GSSTTTSSTS VFGEIMDAKK  180
AMPPDKLAEL WTLDPKRAKR ILANRQSAAR SKERKARYIQ ELERKVQTLQ TEATTLSAQL  240
TLFQRDTTGL SSENTELKLR LQAMEQQAQL RDTLNDALKK EVDRLRIATG EIMSPSESFN  300
LGMHQMAYTL SQFFPLPQHP GPAGHQNMQL PFNHSQSSMS AQQLHQSNSH PLSEMRQNDP  360
LGRMQGLDIS GKGSSLVKSE GPSLSASESS STF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018828447.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	1e-101	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2I4F9X0	0.0	A0A2I4F9X0_JUGRE; transcription factor RF2b-like
STRING	XP_004500364.1	1e-168	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	4e-88	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]