PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006356-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 220aa MW: 23986.2 Da PI: 8.948

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006356-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.4e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ WALNUT_00006356-RA 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQ 132 7**************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e WALNUT_00006356-RA 133 AELNAVRAE 141 ***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.813	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSRERERFDE IGKRIKRETD ASSHVGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQAELNAVRA EILKYKYRQD ANIMSSSQHL ALLTSSGAVS VAAPPPTPPP 180 QPSLPPLPPT SSSSSIYTQQ TSTAADYSTI SSDNIGSYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-46	34	153	3	122	LOB family transfactor Ramosa2.1
5ly0_B	5e-46	34	153	3	122	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821727.1	1e-162	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	4e-90	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2I4EQQ5	1e-161	A0A2I4EQQ5_JUGRE; LOB domain-containing protein 15-like
STRING	cassava4.1_031813m	1e-117	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-85	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]