PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006432-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 436aa MW: 48091 Da PI: 6.8039

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006432-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.2	1.4e-18	61	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGFs + +s++s+ +g+i+ r+fvC +eg ++++ ++ C+a+l+++++ ++kw+v+k++++H+H+++ WALNUT_00006432-RA 61 SFYDEYARRVGFSSKAGQSSRSQSDGTIVARDFVCGREGLKRRHADS--------------CDAMLRIELNGEDKWVVSKFVKDHSHSMV 136 5*************************************9998777..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-15	61	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDVQVIDVEE GMGHRGAADD GGAELNGDEV NTGKTLTVHD EDGNIEPYMG MEFDSEDAAK 60 SFYDEYARRV GFSSKAGQSS RSQSDGTIVA RDFVCGREGL KRRHADSCDA MLRIELNGED 120 KWVVSKFVKD HSHSMVSPSK VHYLRPRRHF AGNSKTITET YEGVGIVPSG VMYVSMDGNH 180 VQLEASRGVR KTPPVESNRL ETYNMAMGAL KEGGKKVSLV KKNVAKVAPP SSQVSGVGYD 240 DRKTSTSASD MTPLLWPRQD EMTRRFNLND TGAPAQSVSD LNLPRMAPVS LHRDDGPPEN 300 MVVLPCLKSM TWVMENKNST PGNRVAVINL KLQDYSRTPS AESEVKFQLS RVSLEPMLRS 360 MAYISEQLST PANKVAVINL KLQDTETTSG ESEVKFQVSR DTLGAMLRSM AYIREQLSNS 420 AENQSEPSSK RQRKAL

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDVQVIDVEE GMGHRGAADD GGAELNGDEV NTGKTLTVHD EDGNIEPYMG MEFDSEDAAK  60
SFYDEYARRV GFSSKAGQSS RSQSDGTIVA RDFVCGREGL KRRHADSCDA MLRIELNGED  120
KWVVSKFVKD HSHSMVSPSK VHYLRPRRHF AGNSKTITET YEGVGIVPSG VMYVSMDGNH  180
VQLEASRGVR KTPPVESNRL ETYNMAMGAL KEGGKKVSLV KKNVAKVAPP SSQVSGVGYD  240
DRKTSTSASD MTPLLWPRQD EMTRRFNLND TGAPAQSVSD LNLPRMAPVS LHRDDGPPEN  300
MVVLPCLKSM TWVMENKNST PGNRVAVINL KLQDYSRTPS AESEVKFQLS RVSLEPMLRS  360
MAYISEQLST PANKVAVINL KLQDTETTSG ESEVKFQVSR DTLGAMLRSM AYIREQLSNS  420
AENQSEPSSK RQRKAL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830791.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_018830800.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_018830810.1	1e-161	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	1e-114	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2H5PET3	0.0	A0A2H5PET3_CITUN; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_103.69	1e-144	(Carica papaya)
STRING	XP_002521644.1	1e-144	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-116	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]