PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00006644-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 292aa MW: 32321 Da PI: 6.3848

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00006644-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.7	1.9e-36	16	70	7	61
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ WALNUT_00006644-RA 16 NCPRCGSCNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 70 8***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51379	7.609	6	38	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain
ProDom	PD007478	2.0E-25	12	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.472	15	69	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-30	16	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MMESGWKPKV DHISPNCPRC GSCNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPV 60 GGGCRKNRRG KSLRLSSTDG VQSRSLSNGN LPHGPLMGNS LLVESTSSSL MNDGSHIDLA 120 LVYAKFLNQK PDSKTGFELP EFPSDFDSRL ESLSISNTDM SSGTQLVEEN CFFECQLTLS 180 HELSVESFPS ANNQMYFCGS ASPIQKHDQA DRTEQSMKYN TSNYGLPPLP GEDITASDQE 240 VVWSSSQMML NHNFEAAQLP GLGSGAQDPN PMISNWISPF DLSSDHATFS RI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851303.1	0.0	PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBL	A0A2I4H585	0.0	A0A2I4H585_JUGRE; dof zinc finger protein DOF3.5-like
STRING	POPTR_0006s21700.1	4e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	6e-48	Dof family protein