PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006721-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 225aa    MW: 25496.5 Da    PI: 8.4946
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006721-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.11.4e-302278259
         ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                        + vrYkeC kNhAa+ Gg+a+DGCgEfmp+ geegt +alkC+AC+CHRnFHR+e e+
  WALNUT_00006721-RA 22 KVVRYKECHKNHAAENGGNATDGCGEFMPN-GEEGTFEALKCSACNCHRNFHRKEIES 78
                        679**************************8.999********************9876 PP
2Homeobox17.38e-06160215152
                         TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         +r Rt+ftkeq e + ++ e    + +++ +++ ++  +++g+++r+ kvW +N +
  WALNUT_00006721-RA 160 KRFRTKFTKEQKEKMLSFAEkagwRMQKLEESAVQQFCQETGINKRVLKVWMHNNK 215
                         789***********987666777779****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.7E-282476IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-212479IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-282576IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.8372675IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.9E-30153220IPR009057Homeodomain-like
SuperFamilySSF466891.96E-19156218IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-25159215IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNNSTQQAEI QLPRNDCHAH KKVVRYKECH KNHAAENGGN ATDGCGEFMP NGEEGTFEAL  60
KCSACNCHRN FHRKEIESDS CSSHCYHTTP TILNINARRS PNWGHHEDQY NAVLGSSIGC  120
PTTTMMISYK SGSVPSESND EKEDAYGSCP VARPADKVKK RFRTKFTKEQ KEKMLSFAEK  180
AGWRMQKLEE SAVQQFCQET GINKRVLKVW MHNNKHHFAN KNSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-241602151873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809238.11e-171PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S02e-59ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2I4DQ161e-170A0A2I4DQ16_JUGRE; zinc-finger homeodomain protein 4-like
STRINGEOX927846e-83(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-53homeobox protein 31