PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006912-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32049.2 Da    PI: 7.0779
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006912-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.6e-20138192256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq  +Le+ F+++ +++ ++++eLAk+l+L +rqV vWFqNrRa+ k
  WALNUT_00006912-RA 138 RKKLRLTKEQSAILEDSFKEHATLNPKQKQELAKQLNLRQRQVEVWFQNRRARTK 192
                         78889************************************************98 PP
2HD-ZIP_I/II121.15.6e-39138226190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+keq+++LE+sF+e+ +L+p++K+ela++L+l++rqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rLeke +eL+ +
  WALNUT_00006912-RA 138 RKKLRLTKEQSAILEDSFKEHATLNPKQKQELAKQLNLRQRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTEENKRLEKELQELK-S 226
                         69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-18125192IPR009057Homeodomain-like
SuperFamilySSF466894.71E-19129195IPR009057Homeodomain-like
PROSITE profilePS5007117.977134194IPR001356Homeobox domain
SMARTSM003891.0E-17136198IPR001356Homeobox domain
CDDcd000861.58E-17137195No hitNo description
PfamPF000464.0E-17138192IPR001356Homeobox domain
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
SMARTSM003401.6E-20194237IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-8194227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSLDDGACDA GLVLALGSQD KPENHLHPDQ EKKIKIRKEI TFSLKYDHLF PSLTLGPSDH  60
ETSTYKFSSK MEDTRKVCGE PVDLQKQAAS SLSPVSSFSN SSSIKRERES GGEEEIEVEK  120
VMISSRVSDE DEDQASPRKK LRLTKEQSAI LEDSFKEHAT LNPKQKQELA KQLNLRQRQV  180
EVWFQNRRAR TKLKQTEVDC ELLKKCCETL TEENKRLEKE LQELKSLKLA AAPFYMQLPA  240
ATLTLCPTCE KLGSNAGDVS STSPFSIAKP KPQFYNPYTH PSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844619.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-83HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2I4GL460.0A0A2I4GL46_JUGRE; homeobox-leucine zipper protein HAT22-like
STRINGcassava4.1_026976m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-67HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]