PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00006913-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 376aa    MW: 43255.1 Da    PI: 6.2395
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00006913-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093043382155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++e+  LA+++gL+++q+ +WF N+R ++
  WALNUT_00006913-RA 304 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 338
                         669*****************************885 PP
2ELK37.93.9e-13258279122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKYsgyL+sLkqE+s
  WALNUT_00006913-RA 258 ELKNHLLRKYSGYLSSLKQELS 279
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-21112156IPR005540KNOX1
PfamPF037901.6E-22113155IPR005540KNOX1
SMARTSM012566.4E-29164215IPR005541KNOX2
PfamPF037911.8E-24168214IPR005541KNOX2
SMARTSM011882000173193IPR005539ELK domain
PfamPF037892.6E-10258279IPR005539ELK domain
SMARTSM011883.5E-7258279IPR005539ELK domain
PROSITE profilePS5121311.296258278IPR005539ELK domain
PROSITE profilePS5007112.876278341IPR001356Homeobox domain
SuperFamilySSF466891.45E-19279353IPR009057Homeodomain-like
SMARTSM003891.0E-12280345IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27283344IPR009057Homeodomain-like
CDDcd000862.11E-11290342No hitNo description
PfamPF059201.4E-16298337IPR008422Homeobox KN domain
PROSITE patternPS000270316339IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEEYNNHLNE NSAQRGNFLY ASPVLAARSS GYGRTSDGSN VSSDQQTQMH INTFPLQSGG  60
ECYQSEVHPI VKTENSGSHH LQTFHYHLMR GHQAGVQQQQ EGRNENSSTD VEAIKAKIFA  120
HPQYSNLLEA YMDCQKVGAP PEMVARLSAA REEFESRQRS SVSSRSETGK DPELDQFMEA  180
YYDMLVKYRD ELSRPIQEAM DFMRRIETQL NMLCNGAVRI FPSDQEKCEG MGSSEEDQDN  240
SAGETEVPEI DPRAEDRELK NHLLRKYSGY LSSLKQELSK KKKKGKLPKD ARQKLLSWWE  300
LHYKWPYPSE TEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM DGLHPQNAAL  360
YMDSHYLGDG HYRLGQ
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844620.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2I4GL480.0A0A2I4GL48_JUGRE; homeobox protein knotted-1-like 2
STRINGEOY156240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-133KNOTTED-like from Arabidopsis thaliana