PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007224-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YC

Protein Properties

Length: 117aa MW: 13091.4 Da PI: 9.3325

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007224-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	108.1	5.1e-34	19	100	19	99
NF-YC 19 helPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 h+lPlarikki+k+ ++v+mis+eaP+++skacel+i elt rsw+ a + krrtl+k d+ +av tdifdflv+ v d WALNUT_00007224-RA 19 HSLPLARIKKIMKKSgDNVNMISCEAPIVFSKACELLIEELTRRSWMVAMQRKRRTLHKEDVVSAVIATDIFDFLVNLVSAD 100 89********865278*********************************************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.53E-25	15	93	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.0E-29	16	84	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	20	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MRQAGMYSGI LAGGRTGPHS LPLARIKKIM KKSGDNVNMI SCEAPIVFSK ACELLIEELT 60 RRSWMVAMQR KRRTLHKEDV VSAVIATDIF DFLVNLVSAD STTPIDLTPV EREKLEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-28	19	97	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	73	QRKRRT

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018805841.1	1e-82	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_018828666.1	1e-82	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-28	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2I4FAJ1	2e-81	A0A2I4FAJ1_JUGRE; nuclear transcription factor Y subunit C-1-like
STRING	EOY24682	1e-59	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10559	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-31	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]