PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007284-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 1604aa MW: 177674 Da PI: 6.0746

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007284-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	1489	1514	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C +sF++k +L+ H r+ + WALNUT_00007284-RA 1489 HRCDleGCRMSFKTKAELVLHKRNrC 1514 789999****************9876 PP
2	zf-C2H2	11.3	0.001	1572	1598	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H WALNUT_00007284-RA 1572 YKCKveGCGLSFRFVSDFSRHRRKtgH 1598 99*********************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.5E-13	15	55	IPR003349	JmjN domain
PROSITE profile	PS51183	13.73	16	57	IPR003349	JmjN domain
Pfam	PF02375	2.3E-14	17	50	IPR003349	JmjN domain
SuperFamily	SSF51197	1.48E-26	291	457	No hit	No description
SMART	SM00558	1.2E-44	291	460	IPR003347	JmjC domain
PROSITE profile	PS51184	34.275	294	460	IPR003347	JmjC domain
Pfam	PF02373	3.8E-35	325	443	IPR003347	JmjC domain
SMART	SM00355	12	1489	1511	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	0.099	1512	1536	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.113	1512	1541	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.1E-5	1512	1548	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-4	1513	1540	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1514	1536	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.2E-9	1541	1566	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0096	1542	1566	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.365	1542	1571	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1544	1566	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.03E-10	1552	1594	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-11	1567	1595	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.22	1572	1598	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.575	1572	1603	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1574	1598	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1604 aa Download sequence Send to blast
MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKKA SAFGICKIIP PLPKPSKKYV 60 FGNLNKSLLR CPELGSDVNS SSLCSSLKIG SGDSDSEGEV RAVFTTRHQE LGQSVKKTKW 120 AVQSPQSVVH KQVWQSGEVY TLEQFESKSK VFARSVLGMT KEVSPLVVEA MFWKAASEKA 180 IYVEYANDVP GSGFGEPEGQ VRFFHRRRRK RNFYQRSKES SDCNKNVIDG VMDSSNDEMK 240 CSSTQNEPNT SLEAPKPSNS SSTLLVDGNL RCSGRKSSNA SNEMEGTAGW KLSNSPWNLQ 300 VIARSPGSLT RFMPDDIPGV TSPMIYIGML FSWFAWHVED HELHSMNFLH TGSPKTWYAV 360 PGDDAFAFEE VIRREAYGGD IDHLAALTLL GEKTTLLSPE VVVASGIPCC RLIQNPGEFV 420 VTFPSAYHVG FSHGFNCGEA ANFGTPQWLK VAKEAAVRRA AMNYLPMLSH QQLLYLLTMS 480 FVSRVPRSLL PGVRSSRLRD RQKEERELLV KKAFIEDMLT ENILLSDLLG KVANCHTVLW 540 NADLLPYPSR DSQLPSVAAT DSTPPTENSS HVHFENKNSC QGDLLHEMSL YMETLNDLYL 600 DGDDVSCDFQ VDSGTLACVA CGILGFPFMC VLQPSEKASM ELLPADNLLV EGGPSVPAPE 660 VTRSPELDRS VKSSISENLP PDPDVSLPPM DLRIPLSTKF DMEWNTSSKF LRPRIFCLEH 720 AIQIVELLHS KGGAKVLVIC HSDYEKIKAH AMAIAEETGR PFNYNEVPLD IASQQDLNLI 780 DLAIDDEEHD ECGEDWTSKL GINLRYCVKV RKKSPSMPIQ YALTLDGLFS DGSPTSELLT 840 IKWQSRRSRS KKLNHPSHNK ACDDAQLKKD EVMGGRSDGI FIKKEEKLIQ YSRRKLKLKL 900 GASTGASTVH GCLGKDLSKD VSTAMYGNLD KQKSGKDSEV DLSNKGSSGS ESAGLVFSTA 960 TRISEMQDET LMLTVTRGMS LNLAPSRIED PPRAATPVAG NFEVQSENHT LHDSDMDGKA 1020 YNLATGDNSE MQHKTKVADE TREDKIADVE KCDGPPSIET GEEFGMRGEN QSMERSSISN 1080 EFCHLISEEK CNVSAEGVSN PASLHVADLV VRNIENGALE DSCVNSKVHI CVSLDNEKQQ 1140 EIQPTIRINN DGPVSGNVAP TNQHSLAPVE GVSCTVAVET HPTLASARAS CEGPRMNHDA 1200 EDISIAMSLE YTGAQELKTK SGSNKAELIS SYVRLANELT PASREILSPD RNEEMVSSSV 1260 STMEVSQPCV PVKRSSEGPR GSPSDEDLHD DVTLDTEMQQ EIQVTNGIDV GESVSRFIMQ 1320 VENEPVTVSG GESFEVPRVN FMEENMNNEV KQVSGHDILT NHPRPASLEK HSMIQRESRA 1380 AENLLCGEVC SPQDDGELES IESTVLDPTP KPECRGKRKR EVERLTENKF SCSDFIRSPC 1440 EGLRPRAEKD ATNRCGIDVS KTVEEKPARK VSKPLDVSHP WNKNAKGSHR CDLEGCRMSF 1500 KTKAELVLHK RNRCPHEGCG KRFSSHKYAM LHQRVHDDDR PLKCPWKGCL MSFKWAWART 1560 EHIRVHTGER PYKCKVEGCG LSFRFVSDFS RHRRKTGHYV NSPT

Sequence ? help Back to Top

Protein Sequence Length: 1604 aa Download sequence Send to blast

MGNVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKKA SAFGICKIIP PLPKPSKKYV  60
FGNLNKSLLR CPELGSDVNS SSLCSSLKIG SGDSDSEGEV RAVFTTRHQE LGQSVKKTKW  120
AVQSPQSVVH KQVWQSGEVY TLEQFESKSK VFARSVLGMT KEVSPLVVEA MFWKAASEKA  180
IYVEYANDVP GSGFGEPEGQ VRFFHRRRRK RNFYQRSKES SDCNKNVIDG VMDSSNDEMK  240
CSSTQNEPNT SLEAPKPSNS SSTLLVDGNL RCSGRKSSNA SNEMEGTAGW KLSNSPWNLQ  300
VIARSPGSLT RFMPDDIPGV TSPMIYIGML FSWFAWHVED HELHSMNFLH TGSPKTWYAV  360
PGDDAFAFEE VIRREAYGGD IDHLAALTLL GEKTTLLSPE VVVASGIPCC RLIQNPGEFV  420
VTFPSAYHVG FSHGFNCGEA ANFGTPQWLK VAKEAAVRRA AMNYLPMLSH QQLLYLLTMS  480
FVSRVPRSLL PGVRSSRLRD RQKEERELLV KKAFIEDMLT ENILLSDLLG KVANCHTVLW  540
NADLLPYPSR DSQLPSVAAT DSTPPTENSS HVHFENKNSC QGDLLHEMSL YMETLNDLYL  600
DGDDVSCDFQ VDSGTLACVA CGILGFPFMC VLQPSEKASM ELLPADNLLV EGGPSVPAPE  660
VTRSPELDRS VKSSISENLP PDPDVSLPPM DLRIPLSTKF DMEWNTSSKF LRPRIFCLEH  720
AIQIVELLHS KGGAKVLVIC HSDYEKIKAH AMAIAEETGR PFNYNEVPLD IASQQDLNLI  780
DLAIDDEEHD ECGEDWTSKL GINLRYCVKV RKKSPSMPIQ YALTLDGLFS DGSPTSELLT  840
IKWQSRRSRS KKLNHPSHNK ACDDAQLKKD EVMGGRSDGI FIKKEEKLIQ YSRRKLKLKL  900
GASTGASTVH GCLGKDLSKD VSTAMYGNLD KQKSGKDSEV DLSNKGSSGS ESAGLVFSTA  960
TRISEMQDET LMLTVTRGMS LNLAPSRIED PPRAATPVAG NFEVQSENHT LHDSDMDGKA  1020
YNLATGDNSE MQHKTKVADE TREDKIADVE KCDGPPSIET GEEFGMRGEN QSMERSSISN  1080
EFCHLISEEK CNVSAEGVSN PASLHVADLV VRNIENGALE DSCVNSKVHI CVSLDNEKQQ  1140
EIQPTIRINN DGPVSGNVAP TNQHSLAPVE GVSCTVAVET HPTLASARAS CEGPRMNHDA  1200
EDISIAMSLE YTGAQELKTK SGSNKAELIS SYVRLANELT PASREILSPD RNEEMVSSSV  1260
STMEVSQPCV PVKRSSEGPR GSPSDEDLHD DVTLDTEMQQ EIQVTNGIDV GESVSRFIMQ  1320
VENEPVTVSG GESFEVPRVN FMEENMNNEV KQVSGHDILT NHPRPASLEK HSMIQRESRA  1380
AENLLCGEVC SPQDDGELES IESTVLDPTP KPECRGKRKR EVERLTENKF SCSDFIRSPC  1440
EGLRPRAEKD ATNRCGIDVS KTVEEKPARK VSKPLDVSHP WNKNAKGSHR CDLEGCRMSF  1500
KTKAELVLHK RNRCPHEGCG KRFSSHKYAM LHQRVHDDDR PLKCPWKGCL MSFKWAWART  1560
EHIRVHTGER PYKCKVEGCG LSFRFVSDFS RHRRKTGHYV NSPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ip0_A	6e-55	270	474	133	346	Transcription factor jumonji (Jmj) family protein
6ip4_A	6e-55	270	474	133	346	Arabidopsis JMJ13
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018828783.1	0.0	PREDICTED: probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A2I4FAW6	0.0	A0A2I4FAW6_JUGRE; probable lysine-specific demethylase ELF6
STRING	XP_008233302.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8031	30	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]