PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007327-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 100aa MW: 11208.5 Da PI: 3.8428

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007327-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43	1.3e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e WALNUT_00007327-RA 1 MVYEANARIRDPVYGCAGAICQLQNQVSELQAQLAKAQAE 40 69**********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.759	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-11	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MVYEANARIR DPVYGCAGAI CQLQNQVSEL QAQLAKAQAE LVNMQCQQAN LVAFICMEMS 60 TQPNHQEEYM SVQQLQPYAD TSCFSSDDNN LGSAWEPLWT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018858749.1	2e-69	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-26	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2I4HRG9	4e-68	A0A2I4HRG9_JUGRE; LOB domain-containing protein 1-like
STRING	AES62228	2e-47	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37341	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-19	LOB domain-containing protein 1