PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007355-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bZIP
Protein Properties Length: 339aa    MW: 36597.4 Da    PI: 7.568
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007355-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.75.2e-23240302163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elkr++rkq+NRe+ArrsR+RK+ e+eeL+ +v++L +eN++L++e+++++ke++klkse+
  WALNUT_00007355-RA 240 ERELKRQKRKQSNRESARRSRLRKQVECEELQARVENLNNENRTLRDEMQRISKECEKLKSEN 302
                         89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.4E-74679IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.4E-699208No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-18234300No hitNo description
SMARTSM003381.1E-19240304IPR004827Basic-leucine zipper domain
PfamPF001701.7E-20240302IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.242242305IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-10244296No hitNo description
CDDcd147022.04E-21245295No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MTFDELNQGR HIVCGVIAEY ITRLVPVLHR YHLGYKRSGH KLQHFKEIPT THSYPDWSSS  60
MQAYYGPGAT PPPFFASTTP NYVQTNAELE GKGPDGKDRA SAKKSKVTSG NSSKAGESAK  120
AASGSGNDGA SQSAESCTEG SSDGSDENND QQDFAASKKG SFHQMLADGA NAQNTTVGGI  180
VQGSVPGKPV ASMPATNLNI GMDLWNASPG GAGAAKVRPN PSGTSSTLEG VMPEQWRQDE  240
RELKRQKRKQ SNRESARRSR LRKQVECEEL QARVENLNNE NRTLRDEMQR ISKECEKLKS  300
ENGSIMEELT SICGPDAIAK LEQNIPTSVL QSHGGDGNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256262RRSRLRK
2256263RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829472.10.0PREDICTED: G-box-binding factor 1 isoform X1
SwissprotP427748e-76GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A2I4FCU40.0A0A2I4FCU4_JUGRE; G-box-binding factor 1 isoform X1
STRINGXP_010070038.11e-133(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.15e-64G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]