PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007410-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 263aa MW: 27836.1 Da PI: 9.8575

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007410-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.6	2.2e-38	32	196	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a+s + + ss + WALNUT_00007410-RA 32 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStLAVSVRAGGCGSSTSlss 122 78**************************************************************999996664222222222211111222 PP TCP 89 .........................................................................k 89 + WALNUT_00007410-RA 123 sststslshsldhkpllgptpfilgkrvradedadckdegpcvsvansmgsllgptatggfwalpartdfwsfA 196 22222333444555566666666666666666666666666666666666666666666666666666666654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	38	92	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-33	38	168	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSNSDGANNG VSNGAIVDPQ RQQPGLNGSL VAVKKPPSKD RHSKVDGRGR RIRMPIICAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTLAVSVR AGGCGSSTSL 120 SSSSTSTSLS HSLDHKPLLG PTPFILGKRV RADEDADCKD EGPCVSVANS MGSLLGPTAT 180 GGFWALPART DFWSFAAPQA EMVQVQQQQQ QQSLFVTHHH QHQQPMGEAS AARVGNYLPG 240 HLNLLASLSR GPGSSGRRED NPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	8e-68	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	8e-68	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	8e-68	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	8e-68	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018830178.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	4e-90	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2I4FEV1	0.0	A0A2I4FEV1_JUGRE; transcription factor TCP7-like
STRING	EOX99084	1e-112	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-68	TCP family protein