PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007621-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 269aa MW: 28100.3 Da PI: 10.1456

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007621-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.7	3.6e-37	31	131	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + s+ +++ s + WALNUT_00007621-RA 31 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStV-SVSVRAGG-GSTSlsss 119 79*************************************************************9999977731.22222222.11112221 PP TCP 89 ...........k 89 + WALNUT_00007621-RA 120 ttssslshsldH 131 222222233330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	36	90	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-33	36	167	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MSNSDVANNV VTNGALLDPR QQPPSNGALS VKKPPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STVSVSVRAG GGSTSLSSST 120 TSSSLSHSLD HKPLLGPAPF ILGKRVRADE DGDGKDEGSG VNVGHTMGSV LGSAASGGFW 180 AVPARPDFWS FAAAAAAAAP SHEMVVQAQA AQQQQPSMFV THHHHHQQQQ PMGEASAARV 240 GNYLPGHLNL LASLSGAQGS SGRREDDPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018817349.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	6e-92	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2I4ED74	0.0	A0A2I4ED74_JUGRE; transcription factor TCP7-like
STRING	EOX99084	1e-115	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-61	TCP family protein