PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007646-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 199aa MW: 23212.1 Da PI: 9.2571

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007646-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.8	6.3e-28	79	160	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e WALNUT_00007646-RA 79 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 160 ******************************************************************84...556899*998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-5	69	140	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.618	71	135	IPR017877	Myb-like domain
SMART	SM00717	3.5E-5	75	137	IPR001005	SANT/Myb domain
CDD	cd12203	1.12E-27	77	142	No hit	No description
SuperFamily	SSF46689	6.75E-5	77	139	IPR009057	Homeodomain-like
Pfam	PF13837	6.8E-22	78	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MNTKTQTLTT MYSEKPRPID FYKEESTRDM MIEVVSNGDL PPHHHPHPHH QQMILGDSSG 60 GDEDHEVEVK APKKRAETWV QDETRSLIAL RREMDGLFNT SKSNKHLWEQ ISSKMREKGF 120 DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE EILRERSKNA QYKSPTPPKV 180 DTYMQFSDKV ISSLNSNQP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	7e-55	73	158	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018817305.1	1e-133	PREDICTED: trihelix transcription factor GT-1-like
Refseq	XP_018817329.1	1e-132	PREDICTED: trihelix transcription factor GT-1-like isoform X3
Refseq	XP_018817330.1	1e-132	PREDICTED: trihelix transcription factor GT-1-like isoform X4
Swissprot	Q9FX53	2e-77	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2I4ED30	1e-132	A0A2I4ED30_JUGRE; trihelix transcription factor GT-1-like
TrEMBL	A0A2I4ED56	1e-131	A0A2I4ED56_JUGRE; trihelix transcription factor GT-1-like isoform X3
TrEMBL	A0A2I4ED60	1e-131	A0A2I4ED60_JUGRE; trihelix transcription factor GT-1-like isoform X4
STRING	XP_008222025.1	1e-101	(Prunus mume)
STRING	POPTR_0010s06510.1	1e-101	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	6e-83	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]