PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007648-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 181aa    MW: 20486.6 Da    PI: 10.2895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007648-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.2e-081466454
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                        + + +Er+RR +++   ++L +l+P  +   ps+  +s  + L  A++YI +L
  WALNUT_00007648-RA 14 NRKTVERNRRIHMKGLCFKLASLIPDlQNIKPSRNmVSQQDKLDYATRYITQL 66
                        56789*********************5556666667899999********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3691066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-101381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-111381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-41471No hitNo description
PfamPF000107.2E-51666IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00121672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MKKTGSNHDA TKPNRKTVER NRRIHMKGLC FKLASLIPDL QNIKPSRNMV SQQDKLDYAT  60
RYITQLRERI EKLKRKKEQV AVSLGTGSCN MIDDTGNGSW LPVVDLRDLG SSIEVILISG  120
LQKNFMHEVT CILQEEGAEV VSGSFSTVGD KIFHTVHAQP KISRIGVETS RVWQRLQELK  180
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018817318.11e-133PREDICTED: uncharacterized protein LOC108988504
TrEMBLA0A2I4ED431e-132A0A2I4ED43_JUGRE; uncharacterized protein LOC108988504
STRINGXP_002511418.17e-73(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-18bHLH family protein