PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007710-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 236aa MW: 26640.9 Da PI: 5.3492

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007710-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.2	2.8e-31	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH++Fv+av+qLGG+++AtPk il++m+++ L ++hvkSHLQkYR+ WALNUT_00007710-RA 11 KERLRWTQELHDQFVQAVNQLGGPDRATPKGILKTMGIPELNIYHVKSHLQKYRI 65 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.052	8	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-29	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-17	10	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-24	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	13	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MGSSRSDGSG KERLRWTQEL HDQFVQAVNQ LGGPDRATPK GILKTMGIPE LNIYHVKSHL 60 QKYRISKYIP ETIGRGGKFE HRTISEMLPN FSTTSAAQLG EAIQMQMEVR RRMSDQLELP 120 SAPILLMLPS LCEESESNAK ESDSDSEADK IGEIHYNDPV EEYRAPKRLR VEHQDDVLSP 180 RFNDIASLEV ESYFPGMFLN SNDHQAQISY PAAHDINFAW NQLTACSSSP LVPSFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825807.1	1e-171	PREDICTED: myb family transcription factor PHL7-like
Swissprot	Q9SJW0	3e-39	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2I4F2D0	1e-169	A0A2I4F2D0_JUGRE; myb family transcription factor PHL7-like
STRING	XP_006481047.1	6e-82	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-41	G2-like family protein