PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007816-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 242aa MW: 24917.4 Da PI: 5.7448

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007816-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2e-37	26	83	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC st tkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+ + WALNUT_00007816-RA 26 TQPLPCPRCGSTSTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRNVPVGGGTRKSIA 83 68899**************************************************854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.9E-32	27	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-22	33	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MPSETADEKP AARLQQSFGY PPPPQTQPLP CPRCGSTSTK FCYYNNYNLS QPRHFCKSCR 60 RYWTQGGTLR NVPVGGGTRK SIAKRSRSNT STSSCSSSSS SSAVNSEALP SNTSPVLPEM 120 VSHDVNLNEN VATVGGAVGS FNFLLNSQGP AGFLGLSGTY GYGSTIPGFE EMSLGLAGAG 180 AWAFPEVGDF GGGSGIGTSL ASAAYGTWQV SGADDQGGLV DGGDSFASPD LSISTPGQGL 240 DK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087500	8e-34	BT087500.1 Zea mays full-length cDNA clone ZM_BFb0096C05 mRNA, complete cds.
GenBank	EU966429	8e-34	EU966429.1 Zea mays clone 294453 mRNA sequence.
GenBank	EU974720	8e-34	EU974720.1 Zea mays clone 456844 dof zinc finger protein MNB1A mRNA, complete cds.
GenBank	JX428529	8e-34	JX428529.1 Zea mays subsp. mays clone pUT3129 DOF16 C2C2-DOF type transcription factor mRNA, partial cds.
GenBank	X79934	8e-34	X79934.1 Z.mays Dof2 mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018822414.1	1e-176	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A2I4ESQ1	1e-175	A0A2I4ESQ1_JUGRE; dof zinc finger protein DOF1.6-like
STRING	POPTR_0007s11790.1	4e-60	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-32	OBF binding protein 1