PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00007841-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 708aa    MW: 78169.9 Da    PI: 7.0402
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00007841-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.7e-12324380155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e Aa+a++ a++k++g
  WALNUT_00007841-RA 324 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEERAARAYDLAALKYWG 380
                         78*******************77776664346655.77******************98 PP
2AP245.12.5e-14455504355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00007841-RA 455 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 504
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-9324380IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-14324390IPR016177DNA-binding domain
CDDcd000183.25E-18324388No hitNo description
SMARTSM003801.7E-21325394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-12325389IPR001471AP2/ERF domain
PROSITE profilePS5103217.28325388IPR001471AP2/ERF domain
PRINTSPR003678.4E-5326337IPR001471AP2/ERF domain
PRINTSPR003678.4E-5370390IPR001471AP2/ERF domain
CDDcd000181.08E-24453514No hitNo description
SuperFamilySSF541711.44E-17453513IPR016177DNA-binding domain
SMARTSM003808.3E-34454518IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18454512IPR001471AP2/ERF domain
PROSITE profilePS5103219.282454512IPR001471AP2/ERF domain
PfamPF008471.2E-9455504IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MKSMHDTNNG SNNSWLGFSL SPHMKMEVTP DPQHPQHHYH HQSQPSSAAV SSAIPTSFYL  60
SSHFNSSAIC YVVGENGGFH SPLSVMPLKS DGSLCIMEAL TRSQSEGMVH SSSPKLEDFL  120
GAASMGAPEY GSHEREAMAL SLDSIYYDQN VEAVNRRDHH LDLLQEPYRQ QEQQIPVQNH  180
PHYAGFPCLG IYQPPLDEES KDTHLADCGS QIPQISEDGI PCLKNWVSGQ YSAQHVLGQQ  240
MNSNMVDDCG ASGSLVSIGC GDLQSLSLSM SPGSQSSCVT ATRQISPTGT ECGAMGTKKR  300
GPGKVAQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG  360
YDMEERAARA YDLAALKYWG PSTHINFPLE NYQVELEEMK NMSRQEYVAH LRRQDSELIV  420
AFCHLCCLIF SGSYSSFSFA FYRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL  480
YLGTFSTQEE AAEAYDVAAI KFRGVNAVTN FDITRYDVER IMASSTLLAG ELARRNKDKE  540
SRTEAIEYNP SMQNGGGTKI PENNNGNGSD WRRVLCQPPQ QTPNSCVESL ENQKSLSFVD  600
YHRNASFSVA PQDLIDVDSV NSGQVMANDS GKHGTHFSNP SSLVTSLSSS REASPDRIGS  660
TNLFAKPPFA SKFISPAAGV SSWWESAQLR PAAIPMAQLP VFAAWTDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018833827.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-138CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2I4FQA90.0A0A2I4FQA9_JUGRE; AP2-like ethylene-responsive transcription factor ANT
STRINGEOY156530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-122AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]