PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00007966-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 253aa MW: 29321.9 Da PI: 5.1823

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00007966-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.6	7.1e-25	1	73	1	72
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk 72 + pGfrFhPtdeelv +yL +kve+k++++ e ik++diyk++PwdL k ++a++kewyfF+ r +ky+t + WALNUT_00007966-RA 1 MLPGFRFHPTDEELVGFYLLRKVEKKPISI-ELIKQIDIYKYDPWDLAKedITNAGDKEWYFFCIRGRKYRTAS 73 579*************************.89**********84345667999**********9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	22.927	1	175	IPR003441	NAC domain
SuperFamily	SSF101941	1.28E-23	2	74	IPR003441	NAC domain
Pfam	PF02365	1.2E-11	3	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MLPGFRFHPT DEELVGFYLL RKVEKKPISI ELIKQIDIYK YDPWDLAKED ITNAGDKEWY 60 FFCIRGRKYR TASDLTESQG LDSGKPQALI SPYIQSTNLV NALASRSPWS TIVEVLVKEV 120 WTLCRIFKRV ASYKKYPTNW KLETSSKQNQ TDSCSKPCSL ESDNDNKELY ISFEDSVLQQ 180 SDERKPLIQQ FDERNHHCFA GQYMNSATTQ FPFPSSYSSF RYPSADDYFF SNGSWDELGP 240 VVQLANDPSQ VYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-19	3	135	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-19	3	135	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-19	3	135	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-19	3	135	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-19	3	135	22	174	NAC domain-containing protein 19
3swm_B	3e-19	3	135	22	174	NAC domain-containing protein 19
3swm_C	3e-19	3	135	22	174	NAC domain-containing protein 19
3swm_D	3e-19	3	135	22	174	NAC domain-containing protein 19
3swp_A	3e-19	3	135	22	174	NAC domain-containing protein 19
3swp_B	3e-19	3	135	22	174	NAC domain-containing protein 19
3swp_C	3e-19	3	135	22	174	NAC domain-containing protein 19
3swp_D	3e-19	3	135	22	174	NAC domain-containing protein 19
4dul_A	3e-19	3	135	19	171	NAC domain-containing protein 19
4dul_B	3e-19	3	135	19	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018859986.1	1e-145	PREDICTED: LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1-like
TrEMBL	A0A2I4HV04	1e-144	A0A2I4HV04_JUGRE; LOW QUALITY PROTEIN: transcription factor JUNGBRUNNEN 1-like
STRING	XP_008380332.1	5e-68	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-44	NAC domain containing protein 42