PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008074-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family DBB
Protein Properties Length: 211aa    MW: 23398.2 Da    PI: 5.9281
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008074-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.6e-06345440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         kC+ +e+ e++  C  ++  lC+ C ++ H        H++v
  WALNUT_00008074-RA  3 IKCDVCEKLEAEVLCCADEAVLCRGCDEKVHAAnklsqkHERV 45
                        58******99*********************667788888776 PP
2zf-B_box30.57.4e-1063105238
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                         + + C+ ++e +  +fC ++++llC+ C +++H g      H+
  WALNUT_00008074-RA  63 QLPPCDVCQERNGYFFCLEDRVLLCKHCDVTTHTGtpyaspHQ 105
                         6789******99*********************8777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
CDDcd000214.68E-5347No hitNo description
SMARTSM003366.3E-7447IPR000315B-box-type zinc finger
SMARTSM003364.1E-962109IPR000315B-box-type zinc finger
PfamPF006431.0E-66496IPR000315B-box-type zinc finger
CDDcd000211.78E-465109No hitNo description
PROSITE profilePS501198.71767109IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKIKCDVCEK LEAEVLCCAD EAVLCRGCDE KVHAANKLSQ KHERVRLVKH PLSSSSSSSS  60
HPQLPPCDVC QERNGYFFCL EDRVLLCKHC DVTTHTGTPY ASPHQRFLIA GLKVALQPSI  120
NHHDMIGFNS GNSSSPMSNS SFSFPADNES RAAMTLEVEA ASAETRATFS DEHHFATGLR  180
WSLDEIFDLK DFNYYEFSEV GSSSTPNCTK D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834173.11e-157PREDICTED: B-box zinc finger protein 23
TrEMBLA0A2I4FRB21e-156A0A2I4FRB2_JUGRE; B-box zinc finger protein 23
STRINGVIT_18s0089g01280.t017e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1837746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-43light-regulated zinc finger protein 1