PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008084-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Whirly
Protein Properties Length: 222aa    MW: 24087.6 Da    PI: 9.3972
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008084-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1591.4e-49541821137
              Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 
                         sv+k+kaal+v +v+ptf++ldsg+++++r+G +++++ +a++erkyd ek+q+ als+tev++l++l++++sce+fhdp++k+sn+G+vr
  WALNUT_00008084-RA  54 SVFKGKAALSVTPVLPTFTKLDSGSVVVDRRGVMMFKFLPAIGERKYDNEKRQVIALSVTEVGSLISLGPQDSCEMFHDPSMKSSNAGQVR 144
                         79***************************************************************************************** PP

              Whirly  92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                         k+l+++P++d         v n+++k++e+f+vPv+ aef+v++++
  WALNUT_00008084-RA 145 KSLSIKPHADA--------VVNNILKTKEYFTVPVTTAEFSVMKTA 182
                         **********5........77889********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.9E-6443200IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544472.28E-5847207IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.9E-4955181IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGNLLSGKLL YGKSGDVKDA SCLHAFTVHA GISTSRENSA AEGYAAQRIF ASYSVFKGKA  60
ALSVTPVLPT FTKLDSGSVV VDRRGVMMFK FLPAIGERKY DNEKRQVIAL SVTEVGSLIS  120
LGPQDSCEMF HDPSMKSSNA GQVRKSLSIK PHADAVVNNI LKTKEYFTVP VTTAEFSVMK  180
TACSFALPHI LGWGRLTNQL PRGTEGQPSK VDSQLLDLEW DK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A5e-784820010170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B5e-784820010170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C5e-784820010170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D5e-784820010170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834183.11e-160PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0346e-87WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2I4FRC21e-159A0A2I4FRC2_JUGRE; single-stranded DNA-bindig protein WHY2, mitochondrial
STRINGXP_004290267.11e-101(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-84WHIRLY 2