PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008107-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family B3
Protein Properties Length: 230aa    MW: 26631.7 Da    PI: 9.9285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008107-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.3e-12105208194
                         EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-E CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLk.egDf 79 
                         f+k+ltp dv +  +rl++ k  +e++         +++  +++ +t++d +g ++ +++++ + + + +vlt+GW++F+k+++L+   Df
  WALNUT_00008107-RA 105 FEKQLTPTDVRTDqCRLSFNKADVENFllpllnksdDLV--RGTPVTVYDMNGrKECSMTFKRWAS-KFHVLTEGWNKFCKEHELRkYEDF 192
                         99********9988**********888***999966555..6667999998884555555543555.58****************967899 PP

                         EEEEE-SS.SEE..EE CS
                  B3  80 vvFkldgr.sefelvv 94 
                         v+  + ++ +++el++
  WALNUT_00008107-RA 193 VTVWMFRHvRSGELCF 208
                         8865444445555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.84E-14105214No hitNo description
SuperFamilySSF1019361.82E-14105201IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-5105214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-16105210IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-8105209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAGKRKLSEW VNGKEVNLEE FSEEFRAAMT LLAIKHAKAD EKIAMALLER AKRSRFTEEH  60
AKTKPKPIQS SHSQTYQHFG PYSPPDCPPV PSLSGLIIGA CSKPFEKQLT PTDVRTDQCR  120
LSFNKADVEN FLLPLLNKSD DLVRGTPVTV YDMNGRKECS MTFKRWASKF HVLTEGWNKF  180
CKEHELRKYE DFVTVWMFRH VRSGELCFVL SMRRMPVFKP LKRSRTTNDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018834012.11e-174PREDICTED: uncharacterized protein LOC109001266
TrEMBLA0A2I4FQT81e-172A0A2I4FQT8_JUGRE; uncharacterized protein LOC109001266
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-26B3 family protein