PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008122-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 893aa    MW: 99149 Da    PI: 6.9174
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008122-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23124225199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  WALNUT_00008122-RA 124 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 211
                         99*****************************9777666.49************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++ +l+++++r+
  WALNUT_00008122-RA 212 WNEKNQLLLGIRRA 225
                         8899999****997 PP
2Auxin_resp121.75.6e-40250333183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  WALNUT_00008122-RA 250 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 333
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-48109253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41116239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-21123224No hitNo description
PROSITE profilePS5086312.492124226IPR003340B3 DNA binding domain
PfamPF023624.7E-22124225IPR003340B3 DNA binding domain
SMARTSM010192.8E-24124226IPR003340B3 DNA binding domain
PfamPF065077.8E-35250333IPR010525Auxin response factor
SuperFamilySSF542771.24E-6750830No hitNo description
PfamPF023095.6E-6753840IPR033389AUX/IAA domain
PROSITE profilePS5174522.727755839IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MKLCITETVF AGEKRVLNSE LWHACAGPLV LLPAVGSRVV YFPQGHSEQV AASTNKEVDT  60
QIPNYPSLLP QLICQLHNVT MHADIDTDEV YAQMTLQPLN PQEQKDAFLP AELATHSKQP  120
TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFSLQPP AQELIARDLH DNEWKFRHIF  180
RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNEKNQLLL GIRRANRPQT VMPSSVLSSD  240
SMHLGLLAAA AHAAATNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRVS VGMRFRMLFE  300
TEESSVRRYM GTITGISDLD PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP  360
MYPSSPFPLR LKRPWQPGLP SFHGMKDDDL GINSPLMWLR GDRGIQPLNF QGIGVSPWMQ  420
PRLEASMLGL NTDMYQAMAA AALQEIRTVD PSKPPHSSLL QFQQLQNLQS RSTALMQPQM  480
VQQPQPQQAF QQVRENQHQS HSQDQTQSQL LQQQLQHQHL FNSQQQQPKL VGHQQISSTV  540
STMPQFTSSS QSQPPSLQAI SSLCQQQSFS DSNGNPVTSA VVSPLHSLLG SFQQDESSHL  600
LNLSRPNPLM PSAAWPSKRA AVDPLLSSAA SHYALPQVEK LGLPQNNMSP NSISLPPFPG  660
RECSIDQGGT DPQSHLLFGV NIEPSSLLMQ NGVSGLRGVA SDSNSTTISF PSSNYMSTAG  720
TDFTLNPALA PNSCIDESGF LQSPENVGQL NPPARTFVKV YKSGSFGRSL DITKFSSYHE  780
LRGELARMFG LEGDLEDPLR SGWQLVFVDR ENDVLLLGDD PWPEFVNSVW CIKILSPQEV  840
LQVGKHRLEL LNSVPIQRLS SSSCDDYANQ QDSRNLSSGI TCVGSPSTEL FNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1641335447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819684.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2I4EJW30.0A0A2I4EJW3_JUGRE; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]