PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00008144-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

TCP

Protein Properties

Length: 461aa MW: 49823.8 Da PI: 7.8564

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00008144-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.3	4.7e-37	76	226	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa 70 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +i el+++ + WALNUT_00008144-RA 76 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGVDQPSKAVEWLIKAAADSIAELPSLntfpdtpkqlsdekranggteqG---- 162 689***********************************************************55544443333333322222111.... PP TCP 71 seceaesssssasnsssg...................kaaksaakskksqksaasalnlak.esrakarararertrekmr 131 + +++a+s+ s++s+ s l+l++ e r kar+rarer ++++ WALNUT_00008144-RA 163 -----------------FdsaaveldgdpnfqnqsqhLSLSKSACSSTSETSKGSGLSLSRsEIRVKARERARERAAKEKE 226 .................023333333334444444447777888999999999999999999999*******8776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-40	77	227	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.671	78	136	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.138	207	225	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MEVEDIQQAT ACKFPRIGNG RNDSGKIGSK GVPDHYPDDE EDGELNRVGP GSDAGGNVNR 60 LRGWNHSRII RVPRASGGKD RHSKVWTSKG LRDRRVRLSV TTAIQFYDLQ DRLGVDQPSK 120 AVEWLIKAAA DSIAELPSLN TFPDTPKQLS DEKRANGGTE QGFDSAAVEL DGDPNFQNQS 180 QHLSLSKSAC SSTSETSKGS GLSLSRSEIR VKARERARER AAKEKEKEID SRIAQNVNQI 240 SHNASFTELL TGGISSVNNN ANSPTRSAHQ NPGCEANLFH KAAARQWTGS TPMDYFDSGL 300 LGPSSRAHHS SGFSGQIHLG NSLPMTMSVP AFNLSGDNHS ELQHFSFVPD PLIPVASATS 360 QPGGGPVDYN LNFTISSGQL AGYNNRGTLQ SNSPSLLPHL QRFSPIDGPN VPFFMASAPS 420 ASLAMENHHH HQFSPGIFDG RLQLSYGDAS RHSEQKGKGK N

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MEVEDIQQAT ACKFPRIGNG RNDSGKIGSK GVPDHYPDDE EDGELNRVGP GSDAGGNVNR  60
LRGWNHSRII RVPRASGGKD RHSKVWTSKG LRDRRVRLSV TTAIQFYDLQ DRLGVDQPSK  120
AVEWLIKAAA DSIAELPSLN TFPDTPKQLS DEKRANGGTE QGFDSAAVEL DGDPNFQNQS  180
QHLSLSKSAC SSTSETSKGS GLSLSRSEIR VKARERARER AAKEKEKEID SRIAQNVNQI  240
SHNASFTELL TGGISSVNNN ANSPTRSAHQ NPGCEANLFH KAAARQWTGS TPMDYFDSGL  300
LGPSSRAHHS SGFSGQIHLG NSLPMTMSVP AFNLSGDNHS ELQHFSFVPD PLIPVASATS  360
QPGGGPVDYN LNFTISSGQL AGYNNRGTLQ SNSPSLLPHL QRFSPIDGPN VPFFMASAPS  420
ASLAMENHHH HQFSPGIFDG RLQLSYGDAS RHSEQKGKGK N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-22	83	137	1	55	Putative transcription factor PCF6
5zkt_B	1e-22	83	137	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018819703.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_018819704.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_018819705.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_018819706.1	0.0	PREDICTED: transcription factor TCP2-like
Refseq	XP_018819707.1	0.0	PREDICTED: transcription factor TCP2-like
Swissprot	Q93V43	5e-77	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A2I4EJY3	0.0	A0A2I4EJY3_JUGRE; transcription factor TCP2-like
STRING	EOY27651	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4019	31	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	2e-57	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]