PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008284-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 323aa    MW: 36081.5 Da    PI: 8.4117
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008284-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.4e-097296126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        +kt+ C  f++ G C+ G+ Ck+aHg
  WALNUT_00008284-RA 72 FKTKMCTSFMA-GMCSKGADCKYAHG 96
                        69*********.*************8 PP
2zf-CCCH28.62.5e-09133156225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k++lC+ f+ + +C+yG+rC+F H
  WALNUT_00008284-RA 133 KMKLCKKFYNGEECPYGERCNFLH 156
                         789*******66************ PP
3zf-CCCH36.11.1e-11215239227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt++C+ + r G+C+yGd+C+FaHg+
  WALNUT_00008284-RA 215 KTKICNSWER-GQCHYGDKCHFAHGQ 239
                         9*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-1269104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-870102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0477198IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-47197IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-47296IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7131158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-9133157IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-7133156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-16210245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9212244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356213240IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5215239IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9215239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MQAQRFDAGS DAIGVWPQVP MNNDQFDMHS QPFKRARNSE DNQSSALPCP PMNSRMNSPI  60
PQVNRGTSNI FFKTKMCTSF MAGMCSKGAD CKYAHGIEDM RQPPPNWQEL AGLRGGEDRS  120
TGHWDDDQKI IHKMKLCKKF YNGEECPYGE RCNFLHEDPA KFRGDSGRFR DSSAISIGTN  180
ESSVVHGAGS NQSDTGRPLN NGSDAVRPNT KPYLKTKICN SWERGQCHYG DKCHFAHGQA  240
ELRAPIEGEA SSMGFIPISA KPQYVPLRDA SPPKTRILPT STEEGRGQKS LLKWKGFKKI  300
DRIYADWLDD VPLAQHLPSK VES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841022.10.0PREDICTED: zinc finger CCCH domain-containing protein 39 isoform X1
RefseqXP_018841024.10.0PREDICTED: zinc finger CCCH domain-containing protein 39 isoform X1
SwissprotQ9LT818e-80C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2I4GAT80.0A0A2I4GAT8_JUGRE; zinc finger CCCH domain-containing protein 39 isoform X1
STRINGXP_008242734.11e-135(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-82C3H family protein