PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00008339-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ZF-HD

Protein Properties

Length: 250aa MW: 28341.7 Da PI: 9.3206

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00008339-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	96.5	2.1e-30	60	114	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++YkeC++NhAas+Ggha DGCgEfmp g + ++l+CaACgCHRnFHRrev WALNUT_00008339-RA 60 VTQYKECMRNHAASMGGHANDGCGEFMPR-GGGDSRQSLTCAACGCHRNFHRREVL 114 578***********************9.555699***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.0E-28	61	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	9.9E-28	62	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-17	62	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.1	63	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS50157	9.432	97	126	IPR007087	Zinc finger, C2H2
SuperFamily	SSF46689	3.39E-19	162	230	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-30	165	230	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.9E-26	170	226	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDLSVVPYKH ITKSQNENDN ENVDVVDDKS TRRFDNEVVK PPVDREPVVM NPEAAVKSTV 60 TQYKECMRNH AASMGGHAND GCGEFMPRGG GDSRQSLTCA ACGCHRNFHR REVLGNYHRL 120 HSAPHPMLLY NASPTMSRPH HRHHESSDRR SETPEGVGPT GALLRSGSAK RFRTKFTQEQ 180 KDRMLEFAER IGWRIQRHDD VALNQFCSEL GVKRNVLKVW MHNNKNAHRR RESSHQSPPS 240 PDPSPQPVGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	8e-29	168	227	16	75	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018841116.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q9M9S0	8e-53	ZHD4_ARATH; Zinc-finger homeodomain protein 4
Swissprot	Q9SB61	2e-53	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2I4GB51	0.0	A0A2I4GB51_JUGRE; zinc-finger homeodomain protein 2-like
STRING	POPTR_0013s11330.1	1e-74	(Populus trichocarpa)
STRING	XP_010104483.1	2e-74	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15092	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-53	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]