PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008378-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 258aa    MW: 29213 Da    PI: 6.5165
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008378-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.15.3e-2791178290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY++Y+ +vGF +r+++ ++sk +g+i+ rt+vC+keg+r++ + + +k++++r  tr+gCka+l v+k +++kw+vtk+++eH+H+l+
  WALNUT_00008378-RA  91 FYSAYGMRVGFVTRINYLSRSKLDGSIIGRTLVCNKEGYRKPYRID-KKNSKPRIATRVGCKAMLSVRKLSTEKWVVTKFVKEHTHALT 178
                         9*****************************************9999.99*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-2491178IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGEIIFLNLN VAVDSELVVG IDDGEFDNST DIELELCNDV TVIRHSVEET SFTDQNDKIS  60
HGSSMEEITI FEGGEPYVGQ EFESEEGAHA FYSAYGMRVG FVTRINYLSR SKLDGSIIGR  120
TLVCNKEGYR KPYRIDKKNS KPRIATRVGC KAMLSVRKLS TEKWVVTKFV KEHTHALTAG  180
NAQNILTNTQ IPNENVKIQE LTQQLLLERK RSASLRKVID LLFSHIEQHA EDLSRRVQHV  240
ADQVKEIESG RKTPQNCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018829021.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBLA0A2I4FBJ80.0A0A2I4FBJ8_JUGRE; protein FAR1-RELATED SEQUENCE 12-like
STRINGEOY097241e-100(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-70FAR1 family protein