PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008396-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 451aa    MW: 50237.4 Da    PI: 7.0462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008396-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19272321356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  WALNUT_00008396-RA 272 FRGVRQRH-WGKWVAEIRLPKN---RTRVWLGTFDTAEEAAVAYDTAAYMLRGE 321
                         8******9.**********965...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.63E-32270330No hitNo description
PROSITE profilePS5103222.682271328IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22271329IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-31271330IPR001471AP2/ERF domain
SMARTSM003803.8E-36271334IPR001471AP2/ERF domain
PfamPF008471.1E-12272321IPR001471AP2/ERF domain
PRINTSPR003671.2E-10272283IPR001471AP2/ERF domain
PRINTSPR003671.2E-10294310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEHQLPKMGM IYMMQNDHEL PSYVQGTAVD VGSSFFGDPN YIIWGALNQR ALQEHGGNGC  60
MKSLSSASPD SLFSGSDSTS STDQEASVST LTKNIPRCTK QNLIHKHHLS PFISGLNSDH  120
VPPGASASVR AKESFMIPVN FLDTFPKLAQ SQVSQPSSPS SFSVTAAKSP NLTLFLQEPI  180
TMLESRNADD SPGKNVNIKC QSISSSSNPS FPMSKPGQIP SHWDNEWHGI KRDLKNYSSW  240
LSTSKTQPMK YNTQRMQDEQ QKTDFSSQGK LFRGVRQRHW GKWVAEIRLP KNRTRVWLGT  300
FDTAEEAAVA YDTAAYMLRG EYAQLNFPDQ KHQLQTNSLN GATAALLEAK LRGLSQGISA  360
HTKPTEPPQT SPKINHPYDE NTKLKHLSQN PSRKEWLQFE TLESKVGSEI LIESKKITQE  420
VLSDVDAVDQ LSTMPSLDMD MIWDALLFSE S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21267328163ATERF1
3gcc_A3e-21267328163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860180.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A2I4HVJ10.0A0A2I4HVJ1_JUGRE; ethylene-responsive transcription factor ERF062-like
STRINGcassava4.1_023072m1e-123(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-50ERF family protein