PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008407-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 508aa    MW: 55713.1 Da    PI: 8.2662
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008407-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.5e-17168217155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  WALNUT_00008407-RA 168 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 217
                         78*******************......55************************997 PP
2AP241.14.5e-13260310155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  WALNUT_00008407-RA 260 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 310
                         89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-9168217IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-16168226IPR016177DNA-binding domain
SMARTSM003802.0E-32169231IPR001471AP2/ERF domain
CDDcd000181.78E-11169227No hitNo description
PROSITE profilePS5103217.794169225IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17169226IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-17260320IPR016177DNA-binding domain
PfamPF008471.3E-8260310IPR001471AP2/ERF domain
CDDcd000181.18E-25260320No hitNo description
SMARTSM003805.6E-32261324IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-16261319IPR001471AP2/ERF domain
PROSITE profilePS5103215.527261318IPR001471AP2/ERF domain
PRINTSPR003675.3E-6262273IPR001471AP2/ERF domain
PRINTSPR003675.3E-6300320IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MARIRVEISK TKSAMLDLNL NVVLADSSEK DESVTFLDKL PEGSSGNQLD ESGTSNSSIV  60
NADACEDDSC STRATRDLFT FNFGILKVGG GNDVVTKELF PVSEGKDGDA MNWQGQSSSS  120
SSSSKKNWID LSFDQGGGSA EVRVVQQPQE QQKQQVKKSR RGPRSRSSQY RGVTFYRRTG  180
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFNLSDYD DDMKQMKNLA  240
KEEFVHILRR QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA  300
YDKAAIKCNG REAVTNFELS TYQGEMISEA SNEGGDHNLD LNLGMSPPSL GNGSKEIEGC  360
LQFHSGTYDM QSERSSRMKN HVHSTLTDPH LKGLVTTSEQ STLMKGLYPS FFPNEERATN  420
KRTALGSSQG LPNWAWQMHG QVSAPPMPLI STAASSGFSF LSTPRSAAIP PAKPPSSMPH  480
NLCFTSSATA AANTAPYFYL AKPPPAPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860588.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-125RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2I4HWU50.0A0A2I4HWU5_JUGRE; ethylene-responsive transcription factor RAP2-7-like isoform X1
STRINGXP_010112330.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-135related to AP2.7