PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008439-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 361aa    MW: 40116.9 Da    PI: 10.1512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008439-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005399121123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg+ Fs    L  H+r+H
  WALNUT_00008439-RA  99 HECSLCGQKFSMGQALGGHMRRH 121
                         78********************9 PP
2zf-C2H214.50.0001276298123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg++Fs    L  H+++H
  WALNUT_00008439-RA 276 HECSICGQTFSMGQALGGHMKRH 298
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.6E-124974IPR007087Zinc finger, C2H2
SuperFamilySSF576671.22E-849121No hitNo description
PROSITE profilePS5015710.2425077IPR007087Zinc finger, C2H2
SMARTSM003550.25072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-496121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.8E-999123IPR007087Zinc finger, C2H2
SMARTSM003550.09299121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576679.19E-9224298No hitNo description
PfamPF139123.2E-12224249IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242225252IPR007087Zinc finger, C2H2
SMARTSM003550.2225247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492276303IPR007087Zinc finger, C2H2
PfamPF139124.2E-11276300IPR007087Zinc finger, C2H2
SMARTSM003550.038276298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAMKRMRSED IVGDKDSLDD MAKCLMLLSH GGGLTTDTKP KTCPHPVDVF ECKTCNRQFS  60
SFQALGGHRA SHKRPRLMGE EHKVDRTKLQ SSGNKPKMHE CSLCGQKFSM GQALGGHMRR  120
HRANEGLSSI MNPVDHAKVP MLMKRSNSTR VVCSLDLNLT PLENDLKLLF GKMAPKMAMK  180
RMRSEDVGNK DGLDDMMAKC LMLLSHGRGL ADTMPKTCPL PVQVFECKTC NRQFSSFQAL  240
GGHRASHKKP RLMGEEHEDQ TKLQSNSAGN KKPKMHECSI CGQTFSMGQA LGGHMKRHRA  300
NEGLSASILN PLDHAKVPVL MKRSNSTRVV CSLDLNLTPL ENDLKLLFGK MAPKVDLRLM  360
I
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9373100.0AJ937310.1 Juglans regia mRNA for putative Cys2-His2 zinc finger transcription factor (zfp2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841677.11e-131PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD45e-44ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A2I4GCQ21e-130A0A2I4GCQ2_JUGRE; zinc finger protein ZAT11-like
STRINGXP_010068234.11e-102(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-45C2H2 family protein