PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008554-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 257aa    MW: 29959 Da    PI: 8.9427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008554-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.5e-161965248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        + W +eEd++l+++v+ +G g+W+t++++ g+ R +k+c++rw +yl
  WALNUT_00008554-RA 19 NLWKPEEDLILKNYVETHGEGNWATVSKRSGLMRGGKSCRLRWKNYL 65
                        56*******************************************97 PP
2Myb_DNA-binding54.42.9e-1771116148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg +++eE++l+v+ +k+lG++ W++Ia +++ gRt++++k++w+++l
  WALNUT_00008554-RA  71 RGEMSKEEEDLIVRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 116
                         8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-211268IPR009057Homeodomain-like
PROSITE profilePS5129416.1991365IPR017930Myb domain
SuperFamilySSF466896.12E-2815112IPR009057Homeodomain-like
SMARTSM007172.1E-121767IPR001005SANT/Myb domain
PfamPF002496.5E-141965IPR001005SANT/Myb domain
CDDcd001671.76E-92165No hitNo description
PROSITE profilePS5129426.18166120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2369119IPR009057Homeodomain-like
SMARTSM007175.2E-1770118IPR001005SANT/Myb domain
PfamPF002492.7E-1571116IPR001005SANT/Myb domain
CDDcd001672.80E-1173116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MHRPGVMEVK RVKPQLKKNL WKPEEDLILK NYVETHGEGN WATVSKRSGL MRGGKSCRLR  60
WKNYLRPNIK RGEMSKEEED LIVRMHKLLG NRWSLIAGRL PGRTDNEVKN YWNTHLNKKS  120
LIIGKRKTTE PDHKQREDKD ENMNREKKIR PWCTDHSEPS GSAICLTRTR SQSDLGLDER  180
NMINKEEKDQ AESTFTNPWI NIDDPNSFNC EIEYPMLITG NSNNNARLVF DDEPLIAYLD  240
SFILFEAFGC DGERVGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-231011919127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826719.10.0PREDICTED: transcription factor TT2-like
TrEMBLA0A2I4F5050.0A0A2I4F505_JUGRE; transcription factor TT2-like
STRINGPOPTR_0018s12780.12e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.15e-65myb domain protein 82