PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008721-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 247aa    MW: 27739.7 Da    PI: 6.5136
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008721-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-18134184255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdps +g  +r++lg+f+t  +Aaka++ a+ k++g
  WALNUT_00008721-RA 134 HYRGVRRRP-WGKFAAEIRDPSRRG--RRVWLGTFDTDVDAAKAYDCAAFKIRG 184
                         7********.**********97665..**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-31133193IPR001471AP2/ERF domain
PROSITE profilePS5103224.592134192IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22134193IPR016177DNA-binding domain
PfamPF008475.9E-13134184IPR001471AP2/ERF domain
SMARTSM003803.2E-36134198IPR001471AP2/ERF domain
PRINTSPR003675.6E-13135146IPR001471AP2/ERF domain
CDDcd000186.59E-23142192No hitNo description
PRINTSPR003675.6E-13174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MATPHESSVL DLIRQHLLGD FTSTDSFINS LSFSAPTAYC PQPIKHEAES PISESESHSP  60
TSDPSLYHNP ELEACYLERT ASTFIFGSTR KPHASSTPKH DLPKEVGQSK SLEPAGRSSK  120
KLSDCGDHHD QRRHYRGVRR RPWGKFAAEI RDPSRRGRRV WLGTFDTDVD AAKAYDCAAF  180
KIRGRKAILN FPLEAGESAP NNFSGRKKRR ENISLVEVAE SDEVAAESWM IWDQVQEEEE  240
ELGESRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26133193464ATERF1
3gcc_A1e-26133193464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831042.10.0PREDICTED: ethylene-responsive transcription factor ERF106
TrEMBLA0A2I4FHB40.0A0A2I4FHB4_JUGRE; ethylene-responsive transcription factor ERF106
STRINGPOPTR_0003s15060.14e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-39ERF family protein