PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008722-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 303aa    MW: 33871.1 Da    PI: 7.183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008722-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-20142192255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ kl+g
  WALNUT_00008722-RA 142 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFNTAIEAAKAYDRAAFKLRG 192
                         8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-31141200No hitNo description
Gene3DG3DSA:3.30.730.105.1E-32141200IPR001471AP2/ERF domain
SMARTSM003803.3E-37142206IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-23142202IPR016177DNA-binding domain
PfamPF008473.8E-14142192IPR001471AP2/ERF domain
PROSITE profilePS5103224.368142200IPR001471AP2/ERF domain
PRINTSPR003671.7E-13143154IPR001471AP2/ERF domain
PRINTSPR003671.7E-13182202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MASFLESSTL DLIRQHLLCD FTSMESFISN LDVCNSNISQ NQPIQTSELK NGGSNGDIEV  60
SAYLLPKEEP VTYPSSSFNQ TNSDLETKPK PFHSNPPQTS NLSHRRPSIN VAIPPPTFRL  120
NSQPMLEAGC NPNVSNHSES KHYRGVRRRP WGKFAAEIRD PNRKGSRVWL GTFNTAIEAA  180
KAYDRAAFKL RGSKAILNFP LEFTANTPEN NTAEVSVGRK RTRESEIEEE TNRVVERKEV  240
KEEPVERARE VMAESVSAAV HPLTPSSWTE VWDCEVKGIF SVPPLSPLPP HPSLGYSRLM  300
VIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-30141201161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-30138205168ATERF1
3gcc_A9e-30138205168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831214.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A2I4FHS80.0A0A2I4FHS8_JUGRE; ethylene-responsive transcription factor 5-like
STRINGXP_008234445.12e-86(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-41ERF family protein