PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008913-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23742.4 Da    PI: 10.7774
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008913-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien + rqvtfskRrng+lKK  ELS+LCdaeva++ifs++gk y ++s
  WALNUT_00008913-RA  9 KRIENPTSRQVTFSKRRNGLLKKSLELSILCDAEVAILIFSPSGKAYQFAS 59
                        79**********************************************986 PP
2K-box75.31.7e-2581171999
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         l +  +e +++e++ Lk+  + L++ +Rhl GedL+ L++keL+q+e+q++++++++Rs+K +++ e+i+ l++k+k+lqeen +L+k+++
  WALNUT_00008913-RA  81 LRSVSMEFWKTEIEELKRSANLLETRLRHLAGEDLSMLNMKELKQIERQIKTGVERVRSRKRRMMSEHINLLKMKQKALQEENSRLQKRVK 171
                         5566789********************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.244161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-31290IPR002100Transcription factor, MADS-box
CDDcd002651.98E-37270No hitNo description
PRINTSPR004048.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.20486178IPR002487Transcription factor, K-box
PfamPF014863.3E-2286170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KSLELSILCD AEVAILIFSP SGKAYQFASH  60
DMDRTIARYR REVGFPLSSD LRSVSMEFWK TEIEELKRSA NLLETRLRHL AGEDLSMLNM  120
KELKQIERQI KTGVERVRSR KRRMMSEHIN LLKMKQKALQ EENSRLQKRV KLHELHDDNV  180
SLRASGENVY NAYPRPVLQN GVGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-22190189MEF2 CHIMERA
6bz1_B4e-22190189MEF2 CHIMERA
6bz1_C4e-22190189MEF2 CHIMERA
6bz1_D4e-22190189MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143SRKRRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1900730.0KM190073.1 Carya cathayensis MADS-like protein (TM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018828586.11e-148PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLA0A2I4FAB11e-147A0A2I4FAB1_JUGRE; truncated transcription factor CAULIFLOWER A-like isoform X1
STRINGGorai.007G043400.17e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-49AGAMOUS-like 20