PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008959-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 271aa    MW: 30459.4 Da    PI: 8.0887
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008959-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-2086135255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  WALNUT_00008959-RA  86 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 135
                         7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-3385144IPR001471AP2/ERF domain
SMARTSM003806.0E-3886149IPR001471AP2/ERF domain
PROSITE profilePS5103225.01486143IPR001471AP2/ERF domain
CDDcd000184.01E-2186144No hitNo description
SuperFamilySSF541713.86E-2286144IPR016177DNA-binding domain
PfamPF008472.8E-1486135IPR001471AP2/ERF domain
PRINTSPR003671.4E-118798IPR001471AP2/ERF domain
PRINTSPR003671.4E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MHGKRPLPSN EGEEKEEDHI FPTYSARSQQ DMSVMVSALA QVISNRDQNP VQVHGNPLIT  60
SQSSTREQDD QSQPTLDQGN VRRPRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE  120
AAALAYDEAA LRFKGSKAKL NFPERVQGRN EIGYLTTRHQ DMHLATEQVP NPIVHMHAPG  180
QSLSDQETYP NLFQYAQLLQ SGDNNLNYAV LPSHYGPERF ASQTSSTSSS SSSSVPSQQL  240
QHHDQFLRFA ARFGSSSSSS SDPDHHTNRR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2685146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018832870.10.0PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH548e-53EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2I4FMK50.0A0A2I4FMK5_JUGRE; ethylene-responsive transcription factor ERF114-like
STRINGXP_010249458.11e-81(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]