PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009034-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 252aa MW: 27611.1 Da PI: 10.011

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009034-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.8	1.6e-35	23	82	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+c rC+stntkfCyynnysl+qPry+Ck+C+ryWt+GG++rnvPvGg +rknkks WALNUT_00009034-RA 23 PQAHLNCRRCNSTNTKFCYYNNYSLTQPRYLCKTCKRYWTEGGSIRNVPVGGCSRKNKKS 82 57789*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-21	23	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-30	25	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.785	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEGIMINTRT SLLSAEKRAI RSPQAHLNCR RCNSTNTKFC YYNNYSLTQP RYLCKTCKRY 60 WTEGGSIRNV PVGGCSRKNK KSAAASRSTS SKTPDFNPVL SLPQFSSQNL KAKEAQVLNL 120 AFPTIDKKYH GWSQGNSSSS ASSAPLSAFE LLRTGIASRG LNTYIPSPML DTSALYYSSA 180 GFHLQELKTT PGFSVDGLGS TGYEIQENSA KLLFPFGESK QISSTNEVEP RKGQAGISTG 240 NWSHAMLNGG YW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018846786.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like
TrEMBL	A0A2I4GSB2	0.0	A0A2I4GSB2_JUGRE; dof zinc finger protein DOF2.5-like
STRING	EOX95655	3e-82	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	3e-47	Dof family protein