PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009119-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 156aa    MW: 17590.7 Da    PI: 7.6709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009119-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-104485955
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r RR+ri ++f  L++l+P        K++ +++Le+A++Y+k Lq
  WALNUT_00009119-RA 44 ARERRHRISDRFKILQSLVPGG-----SKMDTVSMLEEAIHYVKFLQ 85
                        699*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3643584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-144098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.11E-144188No hitNo description
Gene3DG3DSA:4.10.280.101.4E-124188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-134190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-84485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDNFSTANPS SEFSSVANSS KEKKKGGKRS RGVKLSTDPQ SVAARERRHR ISDRFKILQS  60
LVPGGSKMDT VSMLEEAIHY VKFLQTQIWL HQTMISFFDE DPSSLDLASS FPSQQTFNAQ  120
NSLADQEEPS RPVPLPNSCF QSPETLTLDP YVKYYH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826182.11e-113PREDICTED: transcription factor LAX PANICLE-like
TrEMBLA0A2I4F3F31e-112A0A2I4F3F3_JUGRE; transcription factor LAX PANICLE-like
STRINGEOY071299e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-32APRATAXIN-like