PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009253-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 172aa    MW: 19397.2 Da    PI: 10.0172
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009253-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-101443130
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                        +g+WT+eEd +l+ +v+++G g+W++ ++ 
  WALNUT_00009253-RA 14 KGPWTPEEDRILISYVQLYGHGNWRALPKQ 43
                        79***********************99886 PP
2Myb_DNA-binding24.94.8e-0862832446
                        HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                        W++Ia++++ gRt++++k++w++
  WALNUT_00009253-RA 62 WSAIAARLP-GRTDNEIKNFWNS 83
                        *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.925989IPR017930Myb domain
SuperFamilySSF466895.24E-151081IPR009057Homeodomain-like
SMARTSM007172.7E-141387IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231390IPR009057Homeodomain-like
PfamPF002499.2E-91443IPR001005SANT/Myb domain
CDDcd001671.13E-121682No hitNo description
PfamPF002492.6E-66284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAKAPCCENM GLKKGPWTPE EDRILISYVQ LYGHGNWRAL PKQAVSNIYL RFLMYVLSIA  60
LWSAIAARLP GRTDNEIKNF WNSQLKKRLK QNPATRPASI KQNNVGTPVC TLNTSTSNHA  120
SSTFPPQQSQ KVLGLQTDST NDPTKETMIN SSPFMSDEMD FWYKLFAKSG TH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490LKKRLKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820713.11e-107PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH43e-34MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A2I4EMU31e-106A0A2I4EMU3_JUGRE; myb-related protein Myb4-like
STRINGEOY109338e-43(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-36myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]