PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00009281-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 199aa    MW: 22304.2 Da    PI: 9.9442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00009281-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-053860123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C++ F++   L  H+++H
  WALNUT_00009281-RA 38 YTCRFCNRQFRSAQALGGHMNVH 60
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-63565No hitNo description
PfamPF139128.1E-63761IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.0013763IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4063865IPR007087Zinc finger, C2H2
SMARTSM003550.00293860IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MERPYSSSGM VKGNSGSNSF QFEEDRSCRT SWLAKQHYTC RFCNRQFRSA QALGGHMNVH  60
RRDRAARLRF LPSSVSESQN PNHVFASSPS SSSAKFLLHT DRCLPSLSLI TSSSPSSASF  120
NEEKKLVISL PRVDPLSPQG KDITNKRRIR SVLGFQGLNV FTQKDEPTVC RKEGIVSLDL  180
EIGLLKDQKE DLDLELRLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018825246.11e-145PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2I4F0S31e-144A0A2I4F0S3_JUGRE; transcriptional regulator SUPERMAN-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-15zinc-finger protein 10