PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00009298-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ERF

Protein Properties

Length: 157aa MW: 17391.9 Da PI: 7.767

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00009298-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.9	1.6e-20	19	70	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdps ng +r +lg+f+tae+Aa+a+++a+ +++g+ WALNUT_00009298-RA 19 TYRGVRRRP-WGKFAAEIRDPSRNG--ARLWLGTFDTAEDAARAYDRAAYAFRGH 70 69*****.******98887..***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.6E-24	19	78	IPR016177	DNA-binding domain
SMART	SM00380	1.3E-35	19	84	IPR001471	AP2/ERF domain
Pfam	PF00847	2.8E-14	19	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.9E-32	19	78	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.816	19	77	IPR001471	AP2/ERF domain
CDD	cd00018	4.95E-19	20	78	No hit	No description
PRINTS	PR00367	1.8E-11	20	31	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-11	43	59	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MERKTVVGNN EEKGRETPTY RGVRRRPWGK FAAEIRDPSR NGARLWLGTF DTAEDAARAY 60 DRAAYAFRGH LAILNFPNEH QYHQSPSSPS SSSSASLTSS SSDIRKNKDP RGTGSSSSTS 120 NTAGQQGEVI ELEYLDNTLL EELLETQKDR PGKSNDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-29	14	80	9	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018825240.1	1e-113	PREDICTED: ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	6e-40	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A2I4F0S1	1e-112	A0A2I4F0S1_JUGRE; ethylene-responsive transcription factor ERF098-like
STRING	POPTR_0005s24450.1	1e-47	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	5e-28	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]